Motif IL_21304.2 Version IL_21304.2 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_064 | 2XZM | 0.8673 | 0 | A | 18S RRNA | A | 1206 | C | 1207 | A | 1208 | * | U | 1221 | U | 1222 | U | 1223 | cWW | ntHS | cWW | |
| 2 | IL_3U5H_085 | 3U5H | 0.7874 | 4 | 5 | 25S rRNA | A | 1901 | G | 1902 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | ||
| 3 | IL_4A1B_081 | 4A1B | 0.8050 | 4 | 1 | 26S RRNA | A | 1925 | G | 1926 | G | 1930 | * | C | 2328 | U | 2329 | U | 2331 | cWW | cWW | ||
| 4 | IL_1S72_062 | 1S72 | 0.7552 | 4 | Intercalated tWH (H) | 0 | LSU rRNA | A | 1747 | U | 1748 | G | 1752 | * | C | 2031 | U | 2032 | U | 2034 | cWW | cWW | |
| 5 | IL_4IOA_077 | 4IOA | 0.2945 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | tHS | cWW |
| 6 | IL_2QBG_082 | 2QBG | 0.2127 | 1 | B | 23S rRNA | U | 2081 | A | 2082 | G | 2083 | * | U | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 7 | IL_3U5H_100 | 3U5H | 0.2684 | 1 | 5 | 25S rRNA | U | 2423 | A | 2424 | G | 2425 | * | U | 2604 | G | 2605 | G | 2607 | cWW | tHS | cWW | |
| 8 | IL_3V2F_012 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW | |
| 9 | IL_1S72_076 | 1S72 | 0.1653 | 1 | Isolated tHS basepair with bulges (H) | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW |
| 10 | IL_3V2F_079 | 3V2F | 0.1804 | 1 | A | 23S Ribosomal RNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 11 | IL_2XZM_006 | 2XZM | 0.7846 | 3 | A | 18S RRNA | C | 83 | U | 84 | G | 85 | * | U | 57 | G | 58 | G | 62 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGG*CUGU | 2 |
| UAG*UGGG | 2 |
| CAG*CGGG | 2 |
| ACA*UUU | 1 |
| AUUCGG*CUGU | 1 |
| UAG*CGGG | 1 |
| CAG*UGGG | 1 |
| UGCCAG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GG | 6 |
| GUCG*UG | 2 |
| C*U | 1 |
| UUCG*UG | 1 |
| GCCA*U | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_21304.2 | Only in the parent motif |
|---|---|---|---|
| IL_21304.1 Compare | IL_2XZM_006, IL_2QBG_082, IL_3V2F_079, IL_3U5H_085, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_1S72_062, IL_4A1B_081 | IL_4IOA_077, IL_2XZM_064 | IL_2ZJR_078, IL_3U5F_006 |
| IL_86357.2 Compare | IL_2XZM_064 | IL_2XZM_006, IL_2QBG_082, IL_3V2F_079, IL_3U5H_085, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_1S72_062, IL_4A1B_081 | IL_3V2F_062, IL_2QBG_063, IL_4A1B_079, IL_1S72_060, IL_3U5H_083, IL_2ZJR_061 |
Children motifs
- Annotations
-
- (8)
- Intercalated tWH (H) (1)
- Isolated tHS basepair with bulges (H) (1)
- Isolated tHS basepair with bulges (1)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.60 | Max 1.08
Coloring options: