#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-62-73-63-74-5
1 IL_4V88_4614V880.40640Tandem non-canonical cWW pairsA6 SSU rRNAC1495U1496U1497G1498*C1509U1510U1511G1512cWWcwWcWW
2 IL_4V88_3914V880.29170Tandem non-canonical cWW pairsA6 SSU rRNAU302U303U304C305*G109U110U111A112cWWcwWcWwcWW
3 IL_8C3A_3998C3A0.26040Tandem non-canonical cWW pairsCM SSU rRNAU300U301U302C303*G109U110U111A112cWWcwWcWwcWW
4 IL_8HNT_0018HNT0.21380Tandem non-canonical cWW pairsBsgRNAC32U33C34C35*G54U55U56G57cWWcwWncWScWW
5 IL_6JDV_0016JDV0.19850Tandem non-canonical cWW pairsBsgRNAC32U33C34C35*G66U67U68G69cWWcwWncWScWW
6 IL_8C3A_1348C3A0.13650Tandem non-canonical cWW pairs1 LSU rRNAC3200U3201U3202A3203*U3214U3215U3216G3217cWWcwWcWwcWW
7 IL_280D_001280D0.15450Tandem non-canonical cWW pairsB+ARNA (12-mer)C17U18U19G20*C5U6U7G8cWWcwWcWwcWW
8 IL_4UYK_0034UYK0.11540Tandem non-canonical cWW pairsRSRP RNAG81U82U83C84*G117U118U119C120cWWcwWcWwcWW
9 IL_8C3A_0608C3A0.00000Tandem non-canonical cWW pairs1 LSU rRNAA1339U1340U1341G1342*C1354U1355U1356U1357cWWcwWcWwcWW
10 IL_8ID2_0018ID20.11550Tandem non-canonical cWW pairsCRNA (24-mer)A5C6U7G8*C17U18U19U20cWWncWWcWWcWwcWW
11 IL_3R2D_0023R2D0.14420Tandem non-canonical cWW pairsS+RRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
12 IL_6MWN_0056MWN0.11810Tandem non-canonical cWW pairsB IRESC661U662U663U664*A643U644U645G646cWWcwWcWwcWW
13 IL_5TBW_1285TBW0.14360Tandem non-canonical cWW pairs1 LSU rRNAC3249U3250U3251G3252*C3235U3236U3237G3238cWWcwWcWwcWW
14 IL_8C3A_4798C3A0.14410Tandem non-canonical cWW pairsCM SSU rRNAG1710C1711U1712G1713*C1662U1663C1664C1665cWWncWwcWwcWW
15 IL_4EYA_0034EYA0.17750Tandem non-canonical cWW pairsf+eRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
16 IL_4V88_5194V880.18460Tandem non-canonical cWW pairsA6 SSU rRNAC726U727U728G729*C709U710U711G712cWWcwWcWwncWW
17 IL_5TBW_1295TBW0.21030Tandem non-canonical cWW pairs1 LSU rRNAU3300U3301U3302G3303*C3311U3312U3313A3314cWWcwWcWwcWW
18 IL_4K27_0034K270.41570Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC41C42U43G44*C12C13U14G15cWWcWWcWWcWW
19 IL_4K27_0024K270.44480Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC45C46U47G48*C8C9U10G11cWWcWWcWWcWW
20 IL_8X5V_0018X5V0.30190Tandem non-canonical cWW pairsBRNA (110-mer)U28U29C30C31*G40U41U42G43cWWcwWcWWcWW
21 IL_8C3A_0188C3A0.37890Tandem non-canonical cWW pairs1 LSU rRNAA445U446U447U448*G481U482U483U484cWWncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG6
UUUC*GUUA2
CUCC*GUUG2
CCUG*CCUG2
CUUA*UUUG1
GUUC*GUUC1
AUUG*CUUU1
ACUG*CUUU1
CUUU*AUUG1
GCUG*CUCC1
UUUG*CUUA1
UUCC*GUUG1
AUUU*GUUU1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU14
UC*UU3
CU*CU2
CU*UU1
CU*UC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (21)
  • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.07 | Avg 0.29 | Max 0.70
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.8441 s