Motif IL_86432.1 Version IL_86432.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V88_461 | 4V88 | 0.4064 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | C | 1495 | U | 1496 | U | 1497 | G | 1498 | * | C | 1509 | U | 1510 | U | 1511 | G | 1512 | cWW | cwW | cWW | |||
2 | IL_4V88_391 | 4V88 | 0.2917 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | U | 302 | U | 303 | U | 304 | C | 305 | * | G | 109 | U | 110 | U | 111 | A | 112 | cWW | cwW | cWw | cWW | ||
3 | IL_8C3A_399 | 8C3A | 0.2604 | 0 | Tandem non-canonical cWW pairs | CM | SSU rRNA | U | 300 | U | 301 | U | 302 | C | 303 | * | G | 109 | U | 110 | U | 111 | A | 112 | cWW | cwW | cWw | cWW | ||
4 | IL_8HNT_001 | 8HNT | 0.2138 | 0 | Tandem non-canonical cWW pairs | B | sgRNA | C | 32 | U | 33 | C | 34 | C | 35 | * | G | 54 | U | 55 | U | 56 | G | 57 | cWW | cwW | ncWS | cWW | ||
5 | IL_6JDV_001 | 6JDV | 0.1985 | 0 | Tandem non-canonical cWW pairs | B | sgRNA | C | 32 | U | 33 | C | 34 | C | 35 | * | G | 66 | U | 67 | U | 68 | G | 69 | cWW | cwW | ncWS | cWW | ||
6 | IL_8C3A_134 | 8C3A | 0.1365 | 0 | Tandem non-canonical cWW pairs | 1 | LSU rRNA | C | 3200 | U | 3201 | U | 3202 | A | 3203 | * | U | 3214 | U | 3215 | U | 3216 | G | 3217 | cWW | cwW | cWw | cWW | ||
7 | IL_280D_001 | 280D | 0.1545 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (12-mer) | C | 17 | U | 18 | U | 19 | G | 20 | * | C | 5 | U | 6 | U | 7 | G | 8 | cWW | cwW | cWw | cWW | ||
8 | IL_4UYK_003 | 4UYK | 0.1154 | 0 | Tandem non-canonical cWW pairs | R | SRP RNA | G | 81 | U | 82 | U | 83 | C | 84 | * | G | 117 | U | 118 | U | 119 | C | 120 | cWW | cwW | cWw | cWW | ||
9 | IL_8C3A_060 | 8C3A | 0.0000 | 0 | Tandem non-canonical cWW pairs | 1 | LSU rRNA | A | 1339 | U | 1340 | U | 1341 | G | 1342 | * | C | 1354 | U | 1355 | U | 1356 | U | 1357 | cWW | cwW | cWw | cWW | ||
10 | IL_8ID2_001 | 8ID2 | 0.1155 | 0 | Tandem non-canonical cWW pairs | C | RNA (24-mer) | A | 5 | C | 6 | U | 7 | G | 8 | * | C | 17 | U | 18 | U | 19 | U | 20 | cWW | ncWW | cWW | cWw | cWW | |
11 | IL_3R2D_002 | 3R2D | 0.1442 | 0 | Tandem non-canonical cWW pairs | S+R | RNA (12-mer) | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | cwW | cWw | cWW | ||
12 | IL_6MWN_005 | 6MWN | 0.1181 | 0 | Tandem non-canonical cWW pairs | B | IRES | C | 661 | U | 662 | U | 663 | U | 664 | * | A | 643 | U | 644 | U | 645 | G | 646 | cWW | cwW | cWw | cWW | ||
13 | IL_5TBW_128 | 5TBW | 0.1436 | 0 | Tandem non-canonical cWW pairs | 1 | LSU rRNA | C | 3249 | U | 3250 | U | 3251 | G | 3252 | * | C | 3235 | U | 3236 | U | 3237 | G | 3238 | cWW | cwW | cWw | cWW | ||
14 | IL_8C3A_479 | 8C3A | 0.1441 | 0 | Tandem non-canonical cWW pairs | CM | SSU rRNA | G | 1710 | C | 1711 | U | 1712 | G | 1713 | * | C | 1662 | U | 1663 | C | 1664 | C | 1665 | cWW | ncWw | cWw | cWW | ||
15 | IL_4EYA_003 | 4EYA | 0.1775 | 0 | Tandem non-canonical cWW pairs | f+e | RNA (12-mer) | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | cwW | cWw | cWW | ||
16 | IL_4V88_519 | 4V88 | 0.1846 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | C | 726 | U | 727 | U | 728 | G | 729 | * | C | 709 | U | 710 | U | 711 | G | 712 | cWW | cwW | cWw | ncWW | ||
17 | IL_5TBW_129 | 5TBW | 0.2103 | 0 | Tandem non-canonical cWW pairs | 1 | LSU rRNA | U | 3300 | U | 3301 | U | 3302 | G | 3303 | * | C | 3311 | U | 3312 | U | 3313 | A | 3314 | cWW | cwW | cWw | cWW | ||
18 | IL_4K27_003 | 4K27 | 0.4157 | 0 | Tandem non-canonical cWW pairs | U | Myotonic Dystrophy Type 2 RNA | C | 41 | C | 42 | U | 43 | G | 44 | * | C | 12 | C | 13 | U | 14 | G | 15 | cWW | cWW | cWW | cWW | ||
19 | IL_4K27_002 | 4K27 | 0.4448 | 0 | Tandem non-canonical cWW pairs | U | Myotonic Dystrophy Type 2 RNA | C | 45 | C | 46 | U | 47 | G | 48 | * | C | 8 | C | 9 | U | 10 | G | 11 | cWW | cWW | cWW | cWW | ||
20 | IL_8X5V_001 | 8X5V | 0.3019 | 0 | Tandem non-canonical cWW pairs | B | RNA (110-mer) | U | 28 | U | 29 | C | 30 | C | 31 | * | G | 40 | U | 41 | U | 42 | G | 43 | cWW | cwW | cWW | cWW | ||
21 | IL_8C3A_018 | 8C3A | 0.3789 | 0 | Tandem non-canonical cWW pairs | 1 | LSU rRNA | A | 445 | U | 446 | U | 447 | U | 448 | * | G | 481 | U | 482 | U | 483 | U | 484 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUUG*CUUG | 6 |
UUUC*GUUA | 2 |
CUCC*GUUG | 2 |
CCUG*CCUG | 2 |
CUUA*UUUG | 1 |
GUUC*GUUC | 1 |
AUUG*CUUU | 1 |
ACUG*CUUU | 1 |
CUUU*AUUG | 1 |
GCUG*CUCC | 1 |
UUUG*CUUA | 1 |
UUCC*GUUG | 1 |
AUUU*GUUU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UU*UU | 14 |
UC*UU | 3 |
CU*CU | 2 |
CU*UU | 1 |
CU*UC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (21)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.29 | Max 0.70
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