Motif IL_86694.1 Version IL_86694.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-13 | 1-14 | 2-13 | 3-12 | 4-5 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX2_048 | 1VX2 | 0.7357 | 0 | 2 | 18S ribosomal RNA | G | 1065 | U | 1066 | C | 1067 | G | 1068 | U | 1069 | A | 1070 | G | 1071 | * | C | 1047 | G | 1048 | A | 1049 | A | 1050 | G | 1051 | A | 1052 | C | 1053 | ncWW | cSH | ntHS | cWW | ||||||
| 2 | IL_3J7A_011 | 3J7A | 0.1089 | 1 | tWH-tWH-tHW-tHW (H) | A | SSU rRNA | G | 141 | G | 142 | A | 143 | U | 144 | A | 145 | A | 146 | C | 147 | * | G | 163 | C | 164 | U | 165 | A | 166 | A | 167 | A | 169 | C | 170 | cWW | cWW | tWH | tWH | tHW | ntHW | cWW | ||
| 3 | IL_4BPP_011 | 4BPP | 0.0000 | 1 | A | 18S RRNA | G | 137 | G | 138 | A | 139 | U | 140 | A | 141 | A | 142 | C | 143 | * | G | 159 | C | 160 | U | 161 | A | 162 | A | 163 | A | 165 | C | 166 | cWW | cWW | tWH | tWH | tHW | ntHW | cWW | |||
| 4 | IL_3U5F_011 | 3U5F | 0.1016 | 1 | 6 | 18S rRNA | G | 143 | U | 144 | A | 145 | U | 146 | A | 147 | A | 148 | C | 149 | * | G | 165 | C | 166 | U | 167 | A | 168 | A | 169 | A | 171 | C | 172 | cWW | tWH | tWH | tHW | tHW | cWW | ||||
| 5 | IL_2AW7_012 | 2AW7 | 0.1676 | 1 | A | 16S ribosomal RNA | G | 147 | G | 148 | A | 149 | U | 150 | A | 151 | A | 152 | C | 153 | * | G | 168 | C | 169 | U | 170 | A | 171 | A | 172 | A | 174 | C | 175 | cWW | cWW | tWH | tWH | tHW | ntHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAAC*GCUAAUAC | 3 |
| CGAAGAC*GUCGUAG | 1 |
| GUAUAAC*GCUAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAA*CUAAUA | 3 |
| GAAGA*UCGUA | 1 |
| UAUAA*CUAAUA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_86694.1 | Only in the parent motif |
|---|---|---|---|
| IL_25271.2 Compare | IL_2AW7_012, IL_3U5F_011, IL_4BPP_011 | IL_1VX2_048, IL_3J7A_011 |
Children motifs
| Child motif | Common motif instances | Only in IL_86694.1 | Only in the child motif |
|---|---|---|---|
| IL_86694.2 Compare | IL_2AW7_012, IL_3U5F_011, IL_4BPP_011, IL_3J7A_011 | IL_1VX2_048 | IL_4CUX_011 |
- Annotations
-
- (4)
- tWH-tWH-tHW-tHW (H) (1)
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.31 | Max 0.75
Coloring options: