#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-32-82-93-84-75-6
1 IL_2ZJR_0122ZJR0.63800 X LSU rRNAU616U617A618A619G620*C629G630G631A632G633cWWtHScWW
2 IL_3V2F_0163V2F0.53490 A23S Ribosomal RNAU606U607A608A609G610*C618G619G620A621G622cWWntWHtHScWW
3 IL_2QBG_0192QBG0.51840 B23S rRNAU606U607A608A609C610*G618G619G620A621G622cWWntWHtHScWW
4 IL_1S72_0211S720.52100 0 LSU rRNAC663U664A665A666C667*G679G680G681A682G683cWWntWHtHScWW
5 IL_3U5F_0913U5F0.36720 618S rRNAA1719G1720A1721A1722U1723*A1678G1679G1680A1681U1682cWWtHStHScWW
6 IL_3DHS_0043DHS0.26970Triple shearedARNase P RNAC284G285A286A287G288*C297G298G299A300G301cWWncSHtHScWW
7 IL_2A64_0052A640.26430Triple shearedAribonuclease P RNAC284G285A286A287G288*C297G298G299A300G301cWWtSHntHStHScWW
8 IL_2A64_0062A640.21060Triple shearedAribonuclease P RNAC378G379A380A381G382*C347G348G349A350G351cWWtHStHScWW
9 IL_2XZM_0922XZM0.22530 A18S RRNAG1672A1673A1674A1675A1676*U1649G1650G1651A1652C1653cWWtSHntHStHScWW
10 IL_4A1B_1254A1B0.30200 126S RRNAU3217U3218A3219A3220C3221*G3189A3190G3191C3192G3193cWWntSHantHStHScWW
11 IL_3G78_0023G780.22420 AGroup II catalytic intron D1-D4-1C70U71A72A73C74*G113G114A115C116G117cWWntSHntHStHScWW
12 IL_3V2F_0723V2F0.00000 A23S Ribosomal RNAC1882G1883A1884A1885C1886*G1856G1857G1858A1859G1860cWWtSHtHStHScWW
13 IL_3U5H_0753U5H0.19440 525S rRNAU1645G1646A1647A1648U1649*A1806G1807G1808A1809A1810cWWtSHtHStHScWW
14 IL_3IWN_0023IWN0.27540Triple shearedAC-di-GMP riboswitchC12A13A14A15C16*G31G32A33C34G35cWWntSHtHScWW
15 IL_3UCZ_0013UCZ0.36470 RRNA (92-MER)C22A23A24A25C26*G41G42A43C44G45cWWntSHtHScWW
16 IL_2QBG_0682QBG0.29950 B23S rRNAU1720G1721A1722G1723G1724*U1736G1737G1738A1739G1740cWWtSHtHSntHScWW
17 IL_2QBG_0242QBG0.35660 B23S rRNAU703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
18 IL_3V2F_0213V2F0.36830 A23S Ribosomal RNAU703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
19 IL_3U5H_0323U5H0.38860 525S rRNAU834G835A836A837G838*U855G856G857A858G859cWWtSHtHStHScWW
20 IL_1S72_0281S720.35530 0 LSU rRNAU794G795A796A797G798*U815G816G817A818A819cWWtSHtHStHScWW
21 IL_2QWY_0012QWY0.53500 ASAM-II riboswitchA46A47A48A49G50*C16G17U18A19U20cWWtSHtHScWW
22 IL_2ZJR_0712ZJR0.29670 X LSU rRNAC1865G1866A1867A1868A1869*U1848G1849G1850A1851G1852cWWntSHntHSntHScWW
23 IL_1S72_0831S720.32610 0 LSU rRNAC2515G2516A2517C2518C2519*G2501C2502A2503A2504G2505cWWtSHntHScBWcWW
24 IL_2AW7_0582AW70.42470 A16S ribosomal RNAC1259G1260A1261C1262C1263*G1272C1273A1274A1275G1276cWWtSHtHSncBWcWW
25 IL_1U6B_0021U6B0.36110Triple shearedB197-MERG56A57A58A59C60*G84C85A86A87C88cWWtSHtHSncWWcWW
26 IL_3V2F_0923V2F0.40550 A23S Ribosomal RNAC2480G2481G2482C2483G2484*C2466C2467G2468A2469G2470cWWtSHcBWcWW
27 IL_2ZJR_0882ZJR0.41830 X LSU rRNAC2459G2460G2461C2462G2463*C2445C2446G2447A2448G2449cWWtSHcBWcWW
28 IL_4A1B_1104A1B0.38280 126S RRNAC2837G2838A2839C2840G2841*C2823C2824A2825A2826G2827cWWtSHtHSncBWcWW
29 IL_2QBG_0942QBG0.39120 B23S rRNAC2480G2481A2482C2483G2484*C2466C2467A2468A2469G2470cWWtSHntHSncBWcWW
30 IL_3U5H_1123U5H0.46650 525S rRNAC2849G2850A2851C2852A2853*U2835C2836A2837A2838G2839cWWtSHntHScWW
31 IL_2XZM_0272XZM0.52490 A18S RRNAU525U526A527G528C529*G509A510A511C512A513cWWncWWntHSncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAG*CGGAG3
UGAAG*UGGAG3
UUAAG*CGGAG2
CAAAC*GGACG2
CGACC*GCAAG2
CGACG*CCAAG2
UUAAC*GGGAG1
CUAAC*GGGAG1
AGAAU*AGGAU1
UGGAC*GAAAA1
UUAAC*GAGCG1
CUAAC*GGACG1
GGGAG*CGAAC1
UGAAU*AGGAA1
UGAGG*UGGAG1
UGAAG*UGGAA1
AAAAG*CGUAU1
CGAAA*UGGAG1
GAAAC*GCAAC1
CCGAG*CGGCG1
CGGCG*CCGAG1
CGACA*UCAAG1
GAACA*UUAGC1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*GGA10
GAC*CAA5
UAA*GGA4
AAA*GAC2
GGA*AAA1
UAA*AGC1
UAA*GAC1
GGA*GAA1
GAG*GGA1
AAA*GUA1
AAA*CAA1
CGA*GGC1
GGC*CGA1
AAC*UAG1
Annotations
  • Triple sheared (5)
  • Basepair signature
    cWW-tSH-tHS-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.46 | Max 0.80
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