Motif IL_88739.4 Version IL_88739.4 of this group appears in releases 3.87 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7A0S_066 | 7A0S | 0.1712 | 1 | Major groove outside cWW, minor groove, intercalation pocket | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | cWW | |
2 | IL_8C3A_089 | 8C3A | 0.1725 | 1 | Major groove outside cWW, minor groove, intercalation pocket (H) | 1 | LSU rRNA | C | 2174 | A | 2176 | G | 2177 | * | C | 2223 | G | 2224 | cWW | cWW | |
3 | IL_5TBW_084 | 5TBW | 0.1411 | 1 | Major groove outside cWW, minor groove, intercalation pocket | 1 | LSU rRNA | C | 2196 | A | 2198 | G | 2199 | * | C | 2245 | G | 2246 | cWW | cWW | |
4 | IL_8VTW_070 | 8VTW | 0.1966 | 1 | Major groove outside cWW, minor groove, intercalation pocket (H) | 1A | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | cWW | |
5 | IL_4V9F_066 | 4V9F | 0.1403 | 1 | Major groove outside cWW, minor groove, intercalation pocket | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
6 | IL_5J7L_314 | 5J7L | 0.0000 | 1 | Major groove outside cWW, minor groove, intercalation pocket | DA | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | ntHS | cWW |
7 | IL_1U9S_005 | 1U9S | 0.1387 | 1 | Major groove outside cWW, minor groove, intercalation pocket | A | RIBONUCLEASE P | C | 136 | G | 138 | C | 139 | * | G | 161 | G | 162 | cWW | ntHS | cWW |
8 | IL_8VTW_072 | 8VTW | 0.2992 | 1 | Minor groove platform (H) | 1A | LSU rRNA | G | 1846 | A | 1848 | G | 1849 | * | C | 1893 | C | 1894 | cWW | ncWS | cWW |
9 | IL_7A0S_068 | 7A0S | 0.4261 | 1 | Major groove minor groove platform; mini C-loop | X | LSU rRNA | G | 1838 | A | 1840 | G | 1841 | * | C | 1876 | C | 1877 | cWW | ncWS | cWW |
10 | IL_1U9S_002 | 1U9S | 0.4297 | 2 | Major groove outside cWW, minor groove, intercalation pocket | A | RIBONUCLEASE P | G | 111 | A | 114 | G | 115 | * | C | 228 | C | 229 | cWW | cWW | |
11 | IL_6XJQ_003 | 6XJQ | 0.6706 | 2 | A | Self-alkylating ribozyme (58-MER) | U | 42 | G | 45 | C | 46 | * | G | 16 | G | 17 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCGG*CG | 3 |
CCAG*CG | 3 |
GAAG*CC | 2 |
CAGC*GG | 1 |
GAAAG*CC | 1 |
UAGGC*GG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CG* | 3 |
CA* | 3 |
AA* | 2 |
AG* | 1 |
AAA* | 1 |
AGG* | 1 |
- Annotations
-
- Major groove outside cWW, minor groove, intercalation pocket (6)
- Major groove outside cWW, minor groove, intercalation pocket (H) (2)
- (1)
- Major groove minor groove platform; mini C-loop (1)
- Minor groove platform (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.34 | Max 0.73
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