#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-53-4
1 IL_7A0S_0667A0S0.17121Major groove outside cWW, minor groove, intercalation pocketX LSU rRNAC1829G1831G1832*C1885G1886cWWcWW
2 IL_8C3A_0898C3A0.17251Major groove outside cWW, minor groove, intercalation pocket (H)1 LSU rRNAC2174A2176G2177*C2223G2224cWWcWW
3 IL_5TBW_0845TBW0.14111Major groove outside cWW, minor groove, intercalation pocket1 LSU rRNAC2196A2198G2199*C2245G2246cWWcWW
4 IL_8VTW_0708VTW0.19661Major groove outside cWW, minor groove, intercalation pocket (H)1A LSU rRNAC1837G1839G1840*C1902G1903cWWcWW
5 IL_4V9F_0664V9F0.14031Major groove outside cWW, minor groove, intercalation pocket0 LSU rRNAC1893A1895G1896*C1943G1944cWWcWW
6 IL_5J7L_3145J7L0.00001Major groove outside cWW, minor groove, intercalation pocketDA LSU rRNAC1837G1839G1840*C1902G1903cWWntHScWW
7 IL_1U9S_0051U9S0.13871Major groove outside cWW, minor groove, intercalation pocketARIBONUCLEASE PC136G138C139*G161G162cWWntHScWW
8 IL_8VTW_0728VTW0.29921Minor groove platform (H)1A LSU rRNAG1846A1848G1849*C1893C1894cWWncWScWW
9 IL_7A0S_0687A0S0.42611Major groove minor groove platform; mini C-loopX LSU rRNAG1838A1840G1841*C1876C1877cWWncWScWW
10 IL_1U9S_0021U9S0.42972Major groove outside cWW, minor groove, intercalation pocketARIBONUCLEASE PG111A114G115*C228C229cWWcWW
11 IL_6XJQ_0036XJQ0.67062ASelf-alkylating ribozyme (58-MER)U42G45C46*G16G17cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCGG*CG3
CCAG*CG3
GAAG*CC2
CAGC*GG1
GAAAG*CC1
UAGGC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
CG*3
CA*3
AA*2
AG*1
AAA*1
AGG*1

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove outside cWW, minor groove, intercalation pocket (6)
  • Major groove outside cWW, minor groove, intercalation pocket (H) (2)
  • (1)
  • Major groove minor groove platform; mini C-loop (1)
  • Minor groove platform (H) (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.10 | Avg 0.34 | Max 0.73
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