Motif IL_89295.1 Version IL_89295.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_061 | 2QBG | 0.0000 | 0 | B | C | 1526 | G | 1527 | A | 1528 | G | 1529 | * | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | cWW | tSH | tHS | cWW | |
| 2 | IL_1S72_092 | 1S72 | 0.1641 | 1 | UAA/GAN (H) | 0 | U | 2724 | G | 2725 | A | 2727 | C | 2728 | * | G | 2754 | G | 2755 | U | 2756 | A | 2757 | G | 2758 | cWW | tSH | cWW | |
| 3 | IL_1FJG_061 | 1FJG | 0.3437 | 0 | UAA/GAN variation (H) | A | C | 1466 | G | 1467 | A | 1468 | G | 1469 | * | C | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | cWW | tSH | tHS | cWW |
| 4 | IL_3PYO_055 | 3PYO | 0.3407 | 0 | A | U | 1520 | G | 1521 | G | 1522 | U | 1523 | * | A | 1469 | G | 1470 | A | 1471 | A | 1472 | G | 1473 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAG*UGAAG | 1 |
| UGUAC*GGUAG | 1 |
| CGAG*CGAAG | 1 |
| UGGU*AGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GAA | 2 |
| GUA*GUA | 1 |
| GG*GAA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_89295.1 | Only in the parent motif |
|---|---|---|---|
| IL_63717.2 Compare | IL_1S72_092 | IL_2QBG_061, IL_1FJG_061, IL_3PYO_055 | IL_3F1H_035, IL_2ZJR_052, IL_1S72_052, IL_1S72_038, IL_2ZJR_032, IL_3F1H_050 |
| IL_90126.1 Compare | IL_1FJG_061 | IL_2QBG_061, IL_1S72_092, IL_3PYO_055 | IL_2ZY6_001, IL_3FTM_002, IL_3FTM_001, IL_3F1H_057, IL_3FS0_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_89295.1 | Only in the child motif |
|---|---|---|---|
| IL_22732.1 Compare | IL_2QBG_061, IL_1FJG_061 | IL_1S72_092, IL_3PYO_055 | IL_2ZY6_001, IL_2QBG_075 |
| IL_93424.1 Compare | IL_1S72_092 | IL_2QBG_061, IL_1FJG_061, IL_3PYO_055 | IL_3UXR_049, IL_2ZJR_052, IL_2ZJR_032, IL_3U5H_024, IL_3U5H_124, IL_3U5H_126, IL_3U5H_069, IL_2XXA_007, IL_3UXR_036, IL_1X8W_006, IL_3UXR_057, IL_4A1B_067, IL_3UXR_052, IL_4A1B_122, IL_4A1B_126, IL_2QBG_036, IL_2XZM_007, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_2XXA_014 |
- Annotations
-
- (2)
- UAA/GAN variation (H) (1)
- UAA/GAN (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.16 | Avg 0.22 | Max 0.34
Coloring options: