IL_93424.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9	1-9	2-8	3-7	4-7	5-6
1	IL_1S72_052	1S72	0.2411	3	UAA/GAN (H)	0	LSU rRNA	C	1456	U	1457	A	1458	A	1459	G	1460	*	C	1483	G	1484	A	1485	G	1489	cWW	tWH		tHS	cWW
2	IL_1S72_092	1S72	0.2045	1	UAA/GAN variation (H)	0	LSU rRNA	G	2754	G	2755	U	2756	A	2757	G	2758	*	U	2724	G	2725	A	2727	C	2728	cWW			tHS	cWW
3	IL_2XXA_014	2XXA	0.1606	3		G	SSRP RNA	A	62	U	63	A	64	A	65	G	66	*	C	31	G	32	A	33	U	37	cWW	ntWH		ntHS	cWW
4	IL_1X8W_006	1X8W	0.1587	1		A	Tetrahymena ribozyme RNA	C	216	C	217	A	218	A	219	G	220	*	U	253	G	254	C	255	G	257	cWW			ntHS	cWW
5	IL_2XZM_007	2XZM	0.1353	1		A	18S RRNA	C	78	G	79	A	80	A	81	A	82	*	U	63	U	64	A	66	G	67	cWW	ntSH	ntHW		cWW
6	IL_3UXR_049	3UXR	0.0000	1		A	23S ribosomal RNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
7	IL_3U5H_124	3U5H	0.1209	2		5	25S rRNA	C	3084	G	3085	A	3086	A	3087	G	3088	*	U	3054	U	3055	U	3057	G	3059	cWW				cWW
8	IL_2XXA_007	2XXA	0.2003	3	UAA/GAN	F	SSRP RNA	A	62	U	63	A	64	A	65	G	66	*	C	31	G	32	A	33	U	37	cWW	ntWH		tHS	cWW
9	IL_3U5H_024	3U5H	0.2091	0		5	25S rRNA	U	741	G	742	C	743	A	744	C	745	*	G	725	G	726	G	727	G	728	cWW	ntSH		tHS	cWW
10	IL_3UXR_052	3UXR	0.2211	1		A	23S ribosomal RNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		ntHS	cWW
11	IL_2QBG_051	2QBG	0.2158	1		B	23S rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
12	IL_2ZJR_032	2ZJR	0.3050	1	UAA/GAN (H)	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW	tWH		tHS	cWW
13	IL_4A1B_122	4A1B	0.3168	1		1	26S RRNA	A	3092	U	3093	U	3094	A	3095	U	3096	*	A	3116	G	3117	A	3118	U	3120	cWW	ntWH		tHS	cWW
14	IL_3U5H_069	3U5H	0.2914	2		5	25S rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW	tWH		tHS	cWW
15	IL_2QBG_036	2QBG	0.3138	1		B	23S rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
16	IL_4A1B_067	4A1B	0.4031	2		1	26S RRNA	C	1558	U	1559	A	1560	A	1561	G	1562	*	C	1610	A	1611	A	1612	G	1615	cWW	tWH		tHS	cWW
17	IL_4A1B_126	4A1B	0.5764	0		1	26S RRNA	G	3195	G	3196	A	3197	A	3198	G	3199	*	U	3212	G	3213	A	3214	C	3215	cWW			ntHS	cWW
18	IL_2ZJR_052	2ZJR	0.4659	1	UAA/GAN (H)	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435	cWW	tWH		tHS	cWW
19	IL_3U5H_126	3U5H	0.4931	1		5	25S rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW	tWH		tHS	cWW
20	IL_2QBG_054	2QBG	0.4525	1		B	23S rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
21	IL_3UXR_057	3UXR	0.5663	0		A	23S ribosomal RNA	A	1469	G	1470	A	1471	A	1472	G	1473	*	U	1518	G	1519	G	1520	U	1523	cWW			tHS	cWW
22	IL_3UXR_036	3UXR	0.5566	1		A	23S ribosomal RNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
23	IL_1S72_038	1S72	0.5010	1	UAA/GAN (H)	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW	tWH		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	5
AUAAG*CGAACCU	2
CUAAG*CGAUG	2
AUUAU*AGAAU	2
CUAAG*CGAAAUG	1
GGUAG*UGUAC	1
CCAAG*UGCAG	1
CGAAA*UUCAG	1
CGAAG*UUUUUG	1
UGCAC*GGGG	1
CUAAG*CGAAAG	1
CUAAG*CAAAAG	1
GGAAG*UGAC	1
CUAAA*UGAUG	1
AGAAG*UGGU	1
UUAAG*CGAGA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	5
UAA*GAU	3
UAA*GAACC	2
UUA*GAA	2
UAA*GAAAU	1
GUA*GUA	1
CAA*GCA	1
GAA*UCA	1
GAA*UUUU	1
GCA*GG	1
UAA*GAAA	1
UAA*AAAA	1
GAA*GA	1
GAA*GG	1
UAA*GAG	1

Release history

Release	0.6
Date	2012-04-02
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_93424.1	Only in the parent motif
IL_31491.1 Compare	IL_2QBG_036, IL_2ZJR_052, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_2ZJR_032, IL_2XXA_007, IL_2XXA_014	IL_2XZM_007, IL_3UXR_049, IL_3UXR_036, IL_3U5H_069, IL_1S72_092, IL_1X8W_006, IL_3UXR_057, IL_3U5H_024, IL_3UXR_052, IL_3U5H_124, IL_4A1B_122, IL_3U5H_126, IL_4A1B_126, IL_4A1B_067	IL_3PYO_035, IL_3PYO_051, IL_3PYO_048, IL_3O58_080
IL_49866.1 Compare	IL_1X8W_006	IL_3UXR_049, IL_2ZJR_052, IL_2ZJR_032, IL_3U5H_024, IL_3U5H_124, IL_3U5H_126, IL_3U5H_069, IL_2XXA_007, IL_3UXR_036, IL_1S72_092, IL_4A1B_067, IL_3UXR_052, IL_4A1B_122, IL_4A1B_126, IL_2QBG_036, IL_2XZM_007, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_3UXR_057, IL_2XXA_014
IL_89295.1 Compare	IL_1S72_092	IL_3UXR_049, IL_2ZJR_052, IL_2ZJR_032, IL_3U5H_024, IL_3U5H_124, IL_3U5H_126, IL_3U5H_069, IL_2XXA_007, IL_3UXR_036, IL_1X8W_006, IL_3UXR_057, IL_4A1B_067, IL_3UXR_052, IL_4A1B_122, IL_4A1B_126, IL_2QBG_036, IL_2XZM_007, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_2XXA_014	IL_2QBG_061, IL_1FJG_061, IL_3PYO_055
IL_44213.1 Compare	IL_2XZM_007	IL_3UXR_049, IL_2ZJR_052, IL_2ZJR_032, IL_3U5H_024, IL_3U5H_124, IL_3U5H_126, IL_3U5H_069, IL_2XXA_007, IL_3UXR_036, IL_1X8W_006, IL_1S72_092, IL_4A1B_067, IL_3UXR_052, IL_4A1B_122, IL_4A1B_126, IL_2QBG_036, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_3UXR_057, IL_2XXA_014	IL_2QBG_058, IL_2QBG_075

Children motifs

Child motif	Common motif instances	Only in IL_93424.1	Only in the child motif
IL_93424.2 Compare	IL_2QBG_036, IL_2XZM_007, IL_2ZJR_052, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_3U5H_069, IL_1X8W_006, IL_2ZJR_032, IL_2QBG_051, IL_1S72_092, IL_3U5H_024, IL_3U5H_124, IL_4A1B_122, IL_3U5H_126, IL_2XXA_014, IL_4A1B_126, IL_4A1B_067	IL_3UXR_036, IL_3UXR_057, IL_3UXR_049, IL_2XXA_007, IL_3UXR_052	IL_3V2F_057, IL_3V2F_036, IL_3V2F_052, IL_3V2F_049

Motif IL_93424.1 Version IL_93424.1 of this group appears in releases 0.6 to 0.6 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_93424.1 Version IL_93424.1 of this group appears in releases 0.6 to 0.6

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Csv

Json