Motif IL_90628.1 Version IL_90628.1 of this group appears in releases 0.2 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_037 | 1FJG | 0.0000 | 1 | Minor groove platform (H) | A | SSU rRNA | G | 933 | A | 935 | * | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | cWW | cWW | cSW | cSH |
2 | IL_1FJG_039 | 1FJG | 0.4858 | 0 | Minor groove platform (H) | A | SSU rRNA | A | 1044 | C | 1045 | * | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | cWW | cWW | cSW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GCA*UUCCC | 1 |
AC*GACAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
C*UCC | 1 |
*ACA | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_90628.1 | Only in the parent motif |
---|---|---|---|
IL_75582.1 Compare | IL_1FJG_037 | IL_1FJG_039 | |
IL_19775.1 Compare | IL_1FJG_039 | IL_1FJG_037 | IL_1FJG_046, IL_1S72_066 |
Children motifs
Child motif | Common motif instances | Only in IL_90628.1 | Only in the child motif |
---|---|---|---|
IL_87014.1 Compare | IL_1FJG_039 | IL_1FJG_037 | IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_2ZJR_067, IL_1FJG_051, IL_1S72_066 |
IL_40845.1 Compare | IL_1FJG_037 | IL_1FJG_039 |
- Annotations
-
- Minor groove platform (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.49 | Avg 0.24 | Max 0.49
Coloring options: