#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_387D_001387D0.21462Multiple bulged basesARNA PseudoknotU1C2*G15A18cWWcWW
2 IL_7OS0_0027OS00.16402FcrRNAA11C12*G29U32cWWcWW
3 IL_5LYS_0075LYS0.16642Basepair outside cWWB7SK RNAC67U68*A39G42cWWcWW
4 IL_5WTK_0015WTK0.15972Multiple bulged basesBRNA (58-MER)A3C4*G20U23cWWcWW
5 IL_1XOK_0011XOK0.16252Basepair outside cWWAalfalfa mosaic virus RNA 3' UTRC846U847*A864G867cWWcWW
6 IL_1XOK_0021XOK0.18092Basepair outside cWWA+Balfalfa mosaic virus RNA 3' UTRC868C869*G877G880cWWcWW
7 IL_5T83_0045T830.18212Multiple bulged basesAGuanidine-I riboswitchG22C23*G33C36cWWcWW
8 IL_6DLR_0046DLR0.14292Multiple bulged basesAGuanidine-I riboswitchG22C23*G36C39cWWcWW
9 IL_6XH2_0016XH20.13333DTRANS-ACTIVATION RESPONSE ELEMENTC39U40*A22G26cWWcWW
10 IL_6CF2_0026CF20.14242Major groove outside cWW, minor groove, intercalation pocketGRNA (35-MER)C10G11*C22G25cWW
11 IL_3MXH_0043MXH0.15242Multiple bulged basesRc-di-GMP riboswitchG56G57*U81C84cWW
12 IL_1FUF_0021FUF0.16192Multiple bulged basesB+ARNA (14-mer)G23G24*U5C8cWWcWW
13 IL_1FUF_0031FUF0.18482Multiple bulged basesA+BRNA (14-mer)G9G10*U19C22cWWcWW
14 IL_7MLW_0057MLW0.16021FGuanidine-I riboswitchG17G18*U43C45cWW
15 IL_3IWN_0043IWN0.11022Multiple bulged basesAC-di-GMP riboswitchG46G47*U76C79cWWcWW
16 IL_8VTW_0718VTW0.06362Major groove outside cWW, minor groove, intercalation pocket (H)1A LSU rRNAU1841G1842*U1898A1901cWWcWW
17 IL_5J7L_3155J7L0.00002Major groove outside cWW, minor groove, intercalation pocketDA LSU rRNAU1841G1842*U1898A1901cWWcWW
18 IL_4V9F_0674V9F0.08202Major groove outside cWW, minor groove, intercalation pocket0 LSU rRNAU1897G1898*U1939A1942cWWcWW
19 IL_6JQ6_0046JQ60.13651Stack outside cWWURNA (81-MER)G31G32*U62C64cWWcWW
20 IL_8C3A_0908C3A0.14862Major groove outside cWW, minor groove, intercalation pocket (H)1 LSU rRNAU2178G2179*U2219A2222cWWcWW
21 IL_5TBW_0855TBW0.13632Major groove outside cWW, minor groove, intercalation pocket1 LSU rRNAU2200G2201*U2241A2244cWW
22 IL_4WF9_1064WF90.17841Major groove intercalationX LSU rRNAG2858G2859*U2898C2900cWWcWW
23 IL_5J7L_3525J7L0.20321Major groove intercalationDA LSU rRNAG2838G2839*U2878C2880cWWcWW
24 IL_5WT1_0015WT10.30671Major groove outside cWW, intercalation pocketC tRNAA26C27*G43U45cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UG*UAAA3
AC*GACU2
GG*UAGC2
GG*UUUC2
GG*UGC2
GG*UAC2
UC*GGAA1
CU*AUUG1
CU*AAUG1
CC*GAUG1
GC*GGUC1
GC*GGAC1
CU*AUCUG1
CG*CUGG1
UG*UGAA1
UG*UCAA1
AC*GGU1
Non-Watson-Crick part of the motif
SequenceCounts
*GA3
*UU3
*G3
*AA3
*AC2
*AU2
*AG2
*A2
*GU1
*UCU1
*UG1
*CA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Multiple bulged bases (8)
  • Major groove outside cWW, minor groove, intercalation pocket (4)
  • Basepair outside cWW (3)
  • (3)
  • Major groove intercalation (2)
  • Major groove outside cWW, minor groove, intercalation pocket (H) (2)
  • Major groove outside cWW, intercalation pocket (1)
  • Stack outside cWW (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.04 | Avg 0.21 | Max 0.69
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