#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 8 91-92-83-64-5
1 IL_1X8W_0061X8W0.48041ATetrahymena ribozyme RNAU253G254C255G257*C216C217A218A219G220cWWntSHcWW
2 IL_4A1B_1264A1B0.50560126S RRNAU3212G3213A3214C3215*G3195G3196A3197A3198G3199cWWntSHcWW
3 IL_4NVV_0594NVV0.53520A23S Ribosomal RNAU1566G1567G1568U1569*A1516G1517A1518A1519G1520cWWtSHcWW
4 IL_1S72_0921S720.40171UAA/GAN (H)0 LSU rRNAU2724G2725A2727C2728*G2754G2755U2756A2757G2758cWWtSHcWW
5 IL_3U5H_1243U5H0.44762525S rRNAU3054U3055U3057G3059*C3084G3085A3086A3087G3088cWWcWW
6 IL_3U5H_0243U5H0.43740525S rRNAG725G726G727G728*U741G742C743A744C745cWWtSHntHScWW
7 IL_4IOA_0534IOA0.35931UAA/GANX LSU rRNAU1431G1432A1433G1435*C1593U1594A1595A1596A1597cWWtHWcWW
8 IL_2XXA_0142XXA0.29123G SSRP RNAC31G32A33U37*A62U63A64A65G66cWWntSHntHWcWW
9 IL_4A1B_1224A1B0.25341126S RRNAA3116G3117A3118U3120*A3092U3093U3094A3095U3096cWWtSHntHWcWW
10 IL_3U5H_1263U5H0.24381525S rRNAA3127G3128A3129U3131*A3103U3104U3105A3106U3107cWWtSHtHWcWW
11 IL_1VW3_0331VW30.19041A21S ribosomal RNAU1173G1174A1175U1177*A924U925A926A927A928cWWtSHtHWcWW
12 IL_2QBG_0362QBG0.19631B23S rRNAC1153G1154A1155G1157*C998U999A1000A1001G1002cWWtSHtHWcWW
13 IL_4IOA_0324IOA0.20741UAA/GANX LSU rRNAC1164G1165A1166G1168*C1009U1010A1011A1012G1013cWWtSHtHWcWW
14 IL_4NVV_0384NVV0.20551A23S Ribosomal RNAC1199G1200A1201G1203*C1044U1045A1046A1047G1048cWWtSHtHWcWW
15 IL_1S72_0381S720.19401UAA/GAN (H)0 LSU rRNAC1257G1258A1259A1261*U1095U1096A1097A1098G1099cWWtSHtHWcWW
16 IL_2QBG_0512QBG0.14861B23S rRNAC1376G1377A1378G1380*C1351U1352A1353A1354G1355cWWtSHtHWcWW
17 IL_4NVV_0514NVV0.15041A23S Ribosomal RNAC1422G1423A1424G1426*C1397U1398A1399A1400G1401cWWtSHtHWcWW
18 IL_4NVV_0544NVV0.11741A23S Ribosomal RNAC1463G1464A1465G1467*C1624U1625A1626A1627G1628cWWtSHtHWcWW
19 IL_2QBG_0542QBG0.00001B23S rRNAC1417G1418A1419G1421*C1577U1578A1579A1580G1581cWWtSHtHWcWW
20 IL_1S72_0521S720.20403UAA/GAN (H)0 LSU rRNAC1483G1484A1485G1489*C1456U1457A1458A1459G1460cWWtSHtHWcWW
21 IL_3U5H_0693U5H0.22492525S rRNAC1585G1586A1587G1590*C1532U1533A1534A1535G1536cWWtSHtHWcWW
22 IL_4A1B_0674A1B0.26732126S RRNAC1610A1611A1612G1615*C1558U1559A1560A1561G1562cWWtSHtHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAG*CUAAG3
AGAAU*AUUAU2
CUAAG*CGAAG2
CGAUG*CUAAG2
UGCAG*CCAAG1
UGAC*GGAAG1
AGAAG*UGGU1
UGUAC*GGUAG1
UUUUUG*CGAAG1
GGGG*UGCAC1
UGAUG*CUAAA1
CGAACCU*AUAAG1
UGAAU*AUAAA1
CGAGA*UUAAG1
CGAAAUG*CUAAG1
CGAAAG*CUAAG1
CAAAAG*CUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*UAA4
GAU*UAA3
GAA*UUA2
UAA*GAA2
GCA*CAA1
GA*GAA1
GAA*GG1
GUA*GUA1
UUUU*GAA1
GG*GCA1
GAACC*UAA1
GAG*UAA1
GAAAU*UAA1
GAAA*UAA1
AAAA*UAA1
Annotations
  • (17)
  • UAA/GAN (H) (3)
  • UAA/GAN (2)
  • Basepair signature
    cWW-tSH-R-tHW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.35 | Max 0.70
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