Motif IL_94518.3 Version IL_94518.3 of this group appears in releases 3.18 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 4-10 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_058 | 4WF9 | 0.7415 | 1 | X | LSU rRNA | C | 1511 | U | 1512 | A | 1513 | A | 1514 | G | 1515 | C | 1516 | * | G | 1564 | U | 1565 | G | 1566 | A | 1567 | U | 1568 | G | 1570 | cWW | ntHS | ncWS | ncWWa | cWW | |||
| 2 | IL_1D4R_002 | 1D4R | 0.4213 | 0 | Other IL | B+A | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | * | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | cWW | cBW | cWB | cWW | |||
| 3 | IL_4LFB_030 | 4LFB | 0.0000 | 0 | A | SSU rRNA | G | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | C | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | ||
| 4 | IL_5J7L_034 | 5J7L | 0.0647 | 0 | AA | SSU rRNA | A | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | U | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | ||
| 5 | IL_6CZR_142 | 6CZR | 0.1198 | 0 | 1a | SSU rRNA | G | 657 | G | 658 | A | 659 | A | 660 | U | 661 | U | 662 | * | A | 696 | G | 697 | G | 698 | A | 699 | A | 700 | C | 701 | cWW | cWW | ncWw | ncWWa | ncWW | |||
| 6 | IL_4EYA_005 | 4EYA | 0.4728 | 0 | Tandem non-canonical cWW pairs with near WC pairs | g+h | RNA (12-mer) | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | * | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | ncSW | ncWW | ncWw | ncWW | cWW | ||
| 7 | IL_4N0T_001 | 4N0T | 0.6769 | 0 | Double sheared; A in syn; two near cWW pairs | B | U6 snRNA | A | 95 | G | 96 | A | 97 | G | 98 | A | 99 | C | 100 | * | G | 31 | U | 32 | C | 33 | A | 34 | A | 35 | U | 36 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAUU*AGGAAC | 2 |
| CUAAGC*GUGAUGG | 1 |
| GGGAGC*GGGAGC | 1 |
| AGAAUU*AGGAAU | 1 |
| CCUUGG*CCUUGG | 1 |
| AGAGAC*GUCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAU*GGAA | 3 |
| UAAG*UGAUG | 1 |
| GGAG*GGAG | 1 |
| CUUG*CUUG | 1 |
| GAGA*UCAA | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 |
|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Other IL (1)
- Tandem non-canonical cWW pairs with near WC pairs (1)
- Double sheared; A in syn; two near cWW pairs (1)
- Basepair signature
- cWW-cWW-cWW-cWW-L-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.49 | Max 0.91
Coloring options: