Motif IL_72062.1 Version IL_72062.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_105 | 4CUV | 0.8993 | 9 | 1 | 25S RRNA | A | 2450 | U | 2451 | G | 2452 | G | 2462 | * | C | 2493 | C | 2494 | U | 2495 | U | 2496 | cWW | ncWW | cWW | |
| 2 | IL_1VX6_048 | 1VX6 | 0.7342 | 0 | A | 28S ribosomal RNA | A | 1128 | U | 1129 | U | 1130 | A | 1131 | * | U | 1164 | U | 1165 | C | 1166 | U | 1167 | cWW | ncSW | cWw | cWW |
| 3 | IL_4CUV_048 | 4CUV | 0.7514 | 2 | 1 | 25S RRNA | G | 1013 | U | 1014 | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | A | 1036 | C | 1037 | cWW | ncWW | ncBW | cWW |
| 4 | IL_2FQN_003 | 2FQN | 0.0000 | 1 | A+B | RNA (23-mer) | A | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW | |
| 5 | IL_2OE5_002 | 2OE5 | 0.0955 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 2 |
| AUGCGUAGGAUAG*CCUU | 1 |
| AUUA*UUCU | 1 |
| GUUCCG*UGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 2 |
| UGCGUAGGAUA*CU | 1 |
| UU*UC | 1 |
| UUCC*GA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_72062.1 | Only in the parent motif |
|---|---|---|---|
| IL_81597.1 Compare | IL_2FQN_003, IL_2OE5_002 | IL_4CUV_105, IL_4CUV_048, IL_1VX6_048 | IL_1VW3_042 |
| IL_47758.3 Compare | IL_4CUV_105 | IL_2FQN_003, IL_2OE5_002, IL_4CUV_048, IL_1VX6_048 | IL_1DUQ_001, IL_1CSL_001, IL_1S72_037, IL_4BPP_084 |
| IL_48183.2 Compare | IL_4CUV_048 | IL_4CUV_105, IL_1VX6_048, IL_2FQN_003, IL_2OE5_002 | IL_1LNG_002, IL_1NUV_003, IL_4IOA_055, IL_4NVV_011, IL_4NVV_056 |
Children motifs
| Child motif | Common motif instances | Only in IL_72062.1 | Only in the child motif |
|---|---|---|---|
| IL_96532.1 Compare | IL_2FQN_003, IL_2OE5_002, IL_4CUV_048, IL_1VX6_048 | IL_4CUV_105 | IL_4W23_043, IL_3BNQ_002, IL_4QCN_106 |
| IL_70108.1 Compare | IL_4CUV_105 | IL_2FQN_003, IL_2OE5_002, IL_4CUV_048, IL_1VX6_048 | IL_4TZZ_005, IL_4CUX_095, IL_3J7A_035, IL_1S72_037 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cSW-L-R-cWW
- Heat map statistics
- Min 0.10 | Avg 0.53 | Max 0.91
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