Motif IL_96600.1 Version IL_96600.1 of this group appears in releases 3.28 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ZT0_004 | 4ZT0 | 0.0320 | 1 | Single bulged U | D | single-guide RNA | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 2 | IL_5B2T_002 | 5B2T | 0.0000 | 1 | Single bulged U | A | Guide RNA | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 3 | IL_5VW1_002 | 5VW1 | 0.0423 | 1 | Single bulged U | C | sgRNA | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 4 | IL_5FQ5_002 | 5FQ5 | 0.0611 | 1 | Single bulged U | A | SGRNA | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 5 | IL_5F9R_003 | 5F9R | 0.1137 | 1 | Single bulged U | A | RNA (116-MER) | G | 72 | C | 73 | * | G | 76 | C | 78 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GUC | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 5 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged U (5)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.06 | Max 0.11
Coloring options: