Motif IL_97453.2 Version IL_97453.2 of this group appears in releases 0.2 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 3-7 | 4-5 | 6-7 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_055 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | cWW | cSW | cWW | cSH | ||
2 | IL_2FQN_002 | 2FQN | 1.6445 | 0 | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | A | 40 | A | 41 | G | 42 | cWW | cWWa | cWW | ||||
3 | IL_2O3Y_002 | 2O3Y | 1.6867 | 0 | Decoding loop related | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | A | 40 | A | 41 | G | 42 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGCU*AAAAG | 2 |
GCCC*GUAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GC*AAA | 2 |
CC*UAA | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_97453.2 | Only in the parent motif |
---|---|---|---|
IL_97453.1 Compare | IL_2FQN_002, IL_2O3Y_002 | IL_1FJG_055 | |
IL_58589.1 Compare | IL_1FJG_055 | IL_2FQN_002, IL_2O3Y_002 |
Children motifs
Child motif | Common motif instances | Only in IL_97453.2 | Only in the child motif |
---|---|---|---|
IL_75673.1 Compare | IL_1FJG_055 | IL_2FQN_002, IL_2O3Y_002 | IL_3BNQ_008, IL_1FJG_008, IL_3BNQ_002, IL_2O3V_002 |
IL_70339.1 Compare | IL_2O3Y_002 | IL_2FQN_002, IL_1FJG_055 | IL_429D_002 |
IL_22078.1 Compare | IL_2FQN_002 | IL_1FJG_055, IL_2O3Y_002 |
- Annotations
-
- (2)
- Decoding loop related (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.77 | Max 1.69
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