Motif IL_75673.1 Version IL_75673.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 3-7 | 4-5 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2O3V_002 | 2O3V | 0.8859 | 0 | Decoding loop related | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | A | 40 | A | 41 | G | 42 | cWW | cWWa | cWW | |||
| 2 | IL_1FJG_008 | 1FJG | 0.6982 | 0 | A | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | cWW | cWw | cWW | ||||
| 3 | IL_3BNQ_002 | 3BNQ | 0.7690 | 0 | A+B | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | A | 18 | G | 19 | cWW | cwW | ncBW | cWW | |||
| 4 | IL_3BNQ_008 | 3BNQ | 0.8217 | 0 | C+D | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 13 | C | 14 | A | 15 | A | 16 | G | 17 | cWW | cwW | ncwW | cWW | |||
| 5 | IL_1FJG_055 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | cWW | cSW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACC*GCAAG | 2 |
| CGCU*AAAAG | 1 |
| GAUG*CUACC | 1 |
| GCCC*GUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*CAA | 2 |
| GC*AAA | 1 |
| AU*UAC | 1 |
| CC*UAA | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_75673.1 | Only in the parent motif |
|---|---|---|---|
| IL_29996.3 Compare | IL_3BNQ_008, IL_3BNQ_002, IL_2O3V_002 | IL_1FJG_008, IL_1FJG_055 | IL_3LOA_001, IL_3G78_010, IL_1GID_010, IL_429D_002, IL_3BNT_005, IL_3BNT_002, IL_3FTM_001, IL_1GID_003 |
| IL_97453.2 Compare | IL_1FJG_055 | IL_3BNQ_008, IL_1FJG_008, IL_3BNQ_002, IL_2O3V_002 | IL_2FQN_002, IL_2O3Y_002 |
| IL_73748.1 Compare | IL_1FJG_008 | IL_3BNQ_008, IL_3BNQ_002, IL_2O3V_002, IL_1FJG_055 | IL_3F1H_025 |
Children motifs
| Child motif | Common motif instances | Only in IL_75673.1 | Only in the child motif |
|---|---|---|---|
| IL_62873.1 Compare | IL_3BNQ_008, IL_3BNQ_002 | IL_1FJG_008, IL_2O3V_002, IL_1FJG_055 | IL_1U6B_004, IL_1Y0Q_002, IL_2XZM_039, IL_3BNT_005, IL_3BNT_002, IL_3O58_027 |
| IL_29784.1 Compare | IL_2O3V_002 | IL_3BNQ_008, IL_3BNQ_002, IL_1FJG_008, IL_1FJG_055 | IL_3O30_028, IL_3O58_154, IL_3O58_164, IL_2O3Y_003, IL_361D_001 |
| IL_52844.1 Compare | IL_1FJG_055 | IL_3BNQ_008, IL_1FJG_008, IL_3BNQ_002, IL_2O3V_002 | IL_2AW7_061 |
| IL_76093.1 Compare | IL_1FJG_008 | IL_3BNQ_008, IL_3BNQ_002, IL_2O3V_002, IL_1FJG_055 |
- Annotations
-
- (4)
- Decoding loop related (1)
- Basepair signature
- Heat map statistics
- Min 0.12 | Avg 0.47 | Max 0.89
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