Motif IL_70339.1 Version IL_70339.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2O3Y_002 | 2O3Y | 0.0000 | 0 | Decoding loop related | A+B | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | A | 40 | A | 41 | G | 42 | cWW | cWWa | cWW |
| 2 | IL_429D_002 | 429D | 0.9155 | 1 | D+C | G | 143 | G | 144 | A | 145 | G | 146 | * | C | 122 | C | 123 | A | 125 | G | 126 | C | 127 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCU*AAAAG | 1 |
| GGAG*CCGAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*AAA | 1 |
| GA*CGAG | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70339.1 | Only in the parent motif |
|---|---|---|---|
| IL_97453.2 Compare | IL_2O3Y_002 | IL_429D_002 | IL_2FQN_002, IL_1FJG_055 |
| IL_29996.3 Compare | IL_429D_002 | IL_2O3Y_002 | IL_3LOA_001, IL_3BNQ_008, IL_1GID_010, IL_3BNT_002, IL_2O3V_002, IL_3BNT_005, IL_3G78_010, IL_3FTM_001, IL_3BNQ_002, IL_1GID_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_70339.1 | Only in the child motif |
|---|---|---|---|
| IL_68211.1 Compare | IL_429D_002 | IL_2O3Y_002 | IL_3LOA_001, IL_429D_001, IL_1NUJ_001, IL_1NUJ_002, IL_1NUJ_003, IL_2XZM_041, IL_1NUJ_004 |
| IL_34442.1 Compare | IL_2O3Y_002 | IL_429D_002 | IL_1X8W_009, IL_2FQN_002, IL_2ZJR_039, IL_3O58_128, IL_3O58_045, IL_3O58_072, IL_3O30_058, IL_2XZM_014 |
- Annotations
-
- Decoding loop related (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
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