Motif J3_85054.1 Version J3_85054.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-7 | 4-9 | 5-6 | 9-12 | 10-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4WF9_005 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | C | 1342 | U | 1343 | A | 1344 | A | 1345 | G | 1346 | * | C | 1649 | G | 1650 | C | 1651 | A | 1654 | C | 1655 | * | G | 1664 | U | 1665 | A | 1666 | G | 1667 | cWW | tHS | cWW | cWW | ||||
| 2 | J3_5J7L_004 | 5J7L | 0.8244 | 2 | AA | SSU rRNA | C | 857 | G | 858 | G | 859 | A | 860 | G | 861 | * | C | 868 | G | 869 | U | 870 | A | 872 | G | 874 | * | C | 826 | U | 827 | U | 828 | G | 829 | cWW | tSH | tHS | ntWH | cWW | tWW | cWW | |
| 3 | J3_4LFB_001 | 4LFB | 0.8511 | 2 | A | SSU rRNA | C | 857 | G | 858 | A | 859 | A | 860 | G | 861 | * | C | 868 | G | 869 | U | 870 | A | 872 | G | 874 | * | C | 826 | U | 827 | A | 828 | G | 829 | cWW | tSH | cWS | tHS | ntWH | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*CGCAAAC*GUAG | 1 |
| CUUG*CGGAG*CGUUAAG | 1 |
| CUAG*CGAAG*CGUUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GCAAA*UA | 1 |
| UU*GGA*GUUAA | 1 |
| UA*GAA*GUUAA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Heat map statistics
- Min 0.18 | Avg 0.41 | Max 0.85
Coloring options: