Motif J3_91491.2 Version J3_91491.2 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	break		9		10		11	1-3	1-11	3-7	3-10	5-6	8-9
1	J3_7A0S_010	7A0S	0.2509	1	X	LSU rRNA	U	2311	A	2312	A	2314	A	2315	G	2316	*	C	2274	U	2275	C	2276	*	G	2300	A	2301	G	2302		cWW		ncWB	cWW	cWW
2	J3_4Y4O_025	4Y4O	0.1854	1	2A	LSU rRNA	U	2332	A	2333	A	2335	A	2336	G	2337	*	C	2295	U	2296	C	2297	*	G	2321	A	2322	G	2323		cWW	tHW	tWW	cWW	cWW
3	J3_4WF9_008	4WF9	0.0000	1	X	LSU rRNA	C	2359	A	2360	A	2362	A	2363	G	2364	*	C	2322	U	2323	C	2324	*	G	2348	A	2349	G	2350		cWW	tHW	tWW	cWW	cWW
4	J3_4V9F_008	4V9F	0.1260	1	0	LSU rRNA	C	2366	A	2367	A	2369	A	2370	G	2371	*	C	2329	U	2330	C	2331	*	G	2355	A	2356	G	2357		cWW	tHW	tWW	cWW	cWW
5	J3_5TBW_013	5TBW	0.1895	1	1	LSU rRNA	U	2701	A	2702	A	2704	A	2705	G	2706	*	C	2664	U	2665	C	2666	*	G	2690	A	2691	A	2692	ncSs	cWW	tHW	tWW	cWW	cWW
6	J3_5J7L_045	5J7L	0.2022	1	DA	LSU rRNA	C	2332	A	2333	A	2335	A	2336	G	2337	*	C	2295	U	2296	A	2297	*	U	2321	A	2322	G	2323		cWW	tHW	tWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCGAGUAGAAG	2
CUCGAGCAUAAG	1
CUCGAGCAAAAG	1
CUCGAAUAAAAG	1
CUAUAGCAUAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAAGAA	2
UAAUAA	2
UAAAAA	2

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-F-tWW-tHW-cWW-F-cWW
Heat map statistics: Min 0.13 | Avg 0.19 | Max 0.30

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Coloring options: Nucleotide numbers

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