#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5break 6 7 8break 9 10 111-31-113-73-105-68-9
1 J3_7A0S_0107A0S0.25091X LSU rRNAU2311A2312A2314A2315G2316*C2274U2275C2276*G2300A2301G2302cWWncWBcWWcWW
2 J3_5TBW_0135TBW0.189511 LSU rRNAU2701A2702A2704A2705G2706*C2664U2665C2666*G2690A2691A2692ncSscWWtHWtWWcWWcWW
3 J3_4V9F_0084V9F0.126010 LSU rRNAC2366A2367A2369A2370G2371*C2329U2330C2331*G2355A2356G2357cWWtHWtWWcWWcWW
4 J3_7RQB_0117RQB0.177611A LSU rRNAU2332A2333A2335A2336G2337*C2295U2296C2297*G2321A2322G2323ncSscWWtHWtWWcWWcWW
5 J3_4WF9_0084WF90.00001X LSU rRNAC2359A2360A2362A2363G2364*C2322U2323C2324*G2348A2349G2350cWWtHWtWWcWWcWW
6 J3_5J7L_0455J7L0.20221DA LSU rRNAC2332A2333A2335A2336G2337*C2295U2296A2297*U2321A2322G2323cWWtHWtWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUC*GAG*UAGAAG2
CUC*GAA*UAAAAG1
CUC*GAG*CAAAAG1
CUC*GAG*CAUAAG1
CUA*UAG*CAUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
U*A*AGAA2
U*A*AAAA2
U*A*AUAA2

Release history

Release3.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.79
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-03
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-F-tWW-tHW-cWW-F-cWW
    Heat map statistics
    Min 0.13 | Avg 0.18 | Max 0.30
    Help

    Coloring options:

    J3_7A0S_010:J3_7A0S_010 = 0J3_7A0S_010:J3_5TBW_013 = 0.2641J3_7A0S_010:J3_4V9F_008 = 0.267J3_7A0S_010:J3_7RQB_011 = 0.2812J3_7A0S_010:J3_4WF9_008 = 0.2509J3_7A0S_010:J3_5J7L_045 = 0.3045J3_5TBW_013:J3_7A0S_010 = 0.2641J3_5TBW_013:J3_5TBW_013 = 0J3_5TBW_013:J3_4V9F_008 = 0.1479J3_5TBW_013:J3_7RQB_011 = 0.2408J3_5TBW_013:J3_4WF9_008 = 0.1895J3_5TBW_013:J3_5J7L_045 = 0.2445J3_4V9F_008:J3_7A0S_010 = 0.267J3_4V9F_008:J3_5TBW_013 = 0.1479J3_4V9F_008:J3_4V9F_008 = 0J3_4V9F_008:J3_7RQB_011 = 0.1562J3_4V9F_008:J3_4WF9_008 = 0.126J3_4V9F_008:J3_5J7L_045 = 0.2124J3_7RQB_011:J3_7A0S_010 = 0.2812J3_7RQB_011:J3_5TBW_013 = 0.2408J3_7RQB_011:J3_4V9F_008 = 0.1562J3_7RQB_011:J3_7RQB_011 = 0J3_7RQB_011:J3_4WF9_008 = 0.1776J3_7RQB_011:J3_5J7L_045 = 0.26J3_4WF9_008:J3_7A0S_010 = 0.2509J3_4WF9_008:J3_5TBW_013 = 0.1895J3_4WF9_008:J3_4V9F_008 = 0.126J3_4WF9_008:J3_7RQB_011 = 0.1776J3_4WF9_008:J3_4WF9_008 = 0J3_4WF9_008:J3_5J7L_045 = 0.2022J3_5J7L_045:J3_7A0S_010 = 0.3045J3_5J7L_045:J3_5TBW_013 = 0.2445J3_5J7L_045:J3_4V9F_008 = 0.2124J3_5J7L_045:J3_7RQB_011 = 0.26J3_5J7L_045:J3_4WF9_008 = 0.2022J3_5J7L_045:J3_5J7L_045 = 0J3_7A0S_010J3_5TBW_013J3_4V9F_008J3_7RQB_011J3_4WF9_008J3_5J7L_045Discrepancy0.000.050.100.150.200.250.30
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