Motif J4_04930.3 Version J4_04930.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 1-15 | 3-6 | 3-8 | 4-5 | 7-11 | 9-10 | 12-13 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_7A0S_009 | 7A0S | 0.2412 | 1 | X | LSU rRNA | C | 2264 | A | 2265 | A | 2266 | G | 2268 | * | U | 2322 | U | 2323 | G | 2324 | A | 2325 | C | 2326 | * | G | 2349 | G | 2350 | G | 2351 | * | C | 2360 | G | 2361 | G | 2362 | cWW | ncWW | cHW | cWW | cWW | ||
| 2 | J4_7RQB_009 | 7RQB | 0.0000 | 1 | 1A | LSU rRNA | C | 2285 | A | 2286 | A | 2287 | G | 2289 | * | C | 2343 | U | 2344 | G | 2345 | A | 2346 | C | 2347 | * | G | 2370 | G | 2371 | G | 2372 | * | C | 2381 | G | 2382 | G | 2383 | cWW | tWW | tHH | cWW | cHW | cWW | cWW |
| 3 | J4_5J7L_027 | 5J7L | 0.1509 | 1 | DA | LSU rRNA | C | 2285 | G | 2286 | A | 2287 | G | 2289 | * | U | 2343 | U | 2344 | G | 2345 | A | 2346 | C | 2347 | * | G | 2370 | G | 2371 | U | 2372 | * | A | 2381 | G | 2382 | G | 2383 | cWW | tWW | ntHH | cWW | cHW | cWW | cWW |
| 4 | J4_4WF9_008 | 4WF9 | 0.1753 | 1 | X | LSU rRNA | C | 2312 | A | 2313 | A | 2314 | G | 2316 | * | U | 2370 | U | 2371 | G | 2372 | A | 2373 | C | 2374 | * | G | 2397 | G | 2398 | G | 2399 | * | C | 2408 | G | 2409 | G | 2410 | cWW | cWW | cWW | cWW | |||
| 5 | J4_4V9F_009 | 4V9F | 0.2656 | 1 | 0 | LSU rRNA | C | 2319 | U | 2320 | A | 2321 | G | 2323 | * | U | 2377 | U | 2378 | G | 2379 | A | 2380 | C | 2381 | * | G | 2407 | A | 2408 | C | 2409 | * | G | 2418 | U | 2419 | G | 2420 | cWW | tWW | tHH | cWW | cHW | cWW | cWW |
| 6 | J4_5TBW_008 | 5TBW | 0.2715 | 1 | 1 | LSU rRNA | C | 2654 | U | 2655 | A | 2656 | G | 2658 | * | U | 2712 | U | 2713 | G | 2714 | A | 2715 | U | 2716 | * | A | 2740 | C | 2741 | C | 2742 | * | G | 2751 | U | 2752 | G | 2753 | cWW | tWW | ntHH | cWW | ncHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAG*UUGAC*GGG*CGG | 2 |
| CAAAG*CUGAC*GGG*CGG | 1 |
| CGAAG*UUGAC*GGU*AGG | 1 |
| CUAUG*UUGAC*GAC*GUG | 1 |
| CUAAG*UUGAU*ACC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*UGA*G*G | 3 |
| GAA*UGA*G*G | 1 |
| UAU*UGA*A*U | 1 |
| UAA*UGA*C*U | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.21 | Max 0.36
Coloring options: