#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5break 6 7 8 9break 10 111-113-43-75-69-10
1 J4_6CU1_0016CU10.46003AY RNA-likeG52A54G55*C69G70*U15U16G17G20*U36C37cWWcWWcWWcWW
2 J4_2D6F_0022D6F0.19322tRNA junctionFtRNAG907G909G910*U925G926*C944G945A947A949*U965C966cWWncWWcHScWWncWW
3 J4_4QEI_0014QEI0.00002tRNA junctionC tRNAC7G9G10*U25G26*C44G45A46C49*G65G66cWWcWWcHScWWcWW
4 J4_5E6M_0015E6M0.07792tRNA junctionC tRNAC7G9G10*U25G26*C44G45A46C49*G65G66cWWcWWcHScWWcWW
5 J4_3AL0_0013AL00.23072tRNA junctionEtRNAGlnG7C9G10*C25G26*U44G45G46G49*C65C66cWWcWWcHSncWWcWW
6 J4_5WT1_0015WT10.77692C tRNAG7A9G10*C25A26*U45G46C48G49*C65C66cWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUGG*UG*CGACC*GG2
UUGUUG*UC*GUAG*CG1
GUGG*UG*CGACA*UC1
GUCG*CG*UGGUG*CC1
GUAG*CA*UGUCG*CC1
Non-Watson-Crick part of the motif
SequenceCounts
UG**GAC*3
UGUU**UA*1
UC**GGU*1
UA**GUC*1

Release history

Release3.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.83
Date2018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-24
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA junction (4)
  • (2)
  • Basepair signature
    cWW-F-cWW-cWW-cHS-F-cWW
    Heat map statistics
    Min 0.08 | Avg 0.39 | Max 0.82
    Help

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