Motif J5_43153.1 Version J5_43153.1 of this group appears in releases 3.3 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 1-13 | 2-3 | 5-8 | 6-7 | 9-10 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4V9F_002 | 4V9F | 0.2486 | 2 | 0 | LSU rRNA | G | 537 | G | 539 | * | C | 617 | G | 618 | A | 620 | C | 621 | * | G | 634 | A | 635 | G | 636 | * | C | 1365 | C | 1366 | * | G | 2058 | U | 2059 | cWW | cWW | cWw | cWW | cWW | cWW |
| 2 | J5_4WF9_003 | 4WF9 | 0.1038 | 2 | X | LSU rRNA | U | 576 | G | 578 | * | C | 603 | G | 604 | G | 606 | C | 607 | * | G | 620 | A | 621 | A | 622 | * | U | 1299 | G | 1300 | * | C | 2044 | A | 2045 | cWW | cWW | cWW | cWW | cWW | cWW |
| 3 | J5_5J7L_014 | 5J7L | 0.0915 | 2 | DA | LSU rRNA | C | 531 | G | 533 | * | C | 560 | G | 561 | A | 563 | C | 564 | * | G | 577 | G | 578 | G | 579 | * | C | 1261 | A | 1262 | * | U | 2017 | G | 2018 | cWW | cWW | cWW | cWW | cWW | cWW |
| 4 | J5_4Y4O_012 | 4Y4O | 0.0000 | 2 | 2A | LSU rRNA | C | 531 | G | 533 | * | C | 560 | G | 561 | G | 563 | C | 564 | * | G | 577 | A | 578 | G | 579 | * | C | 1261 | A | 1262 | * | U | 2017 | G | 2018 | cWW | cWW | cWW | cWW | cWW | cWW |
| 5 | J5_4IOA_002 | 4IOA | 0.0755 | 2 | X | LSU rRNA | C | 541 | G | 543 | * | C | 569 | G | 570 | G | 572 | C | 573 | * | G | 586 | A | 587 | G | 588 | * | C | 1274 | A | 1275 | * | U | 2000 | G | 2001 | cWW | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CGUGC*GAG*CA*UG | 2 |
| GCG*CGUAC*GAG*CC*GU | 1 |
| UAG*CGUGC*GAA*UG*CA | 1 |
| CAG*CGUAC*GGG*CA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GUG*A** | 3 |
| C*GUA*A** | 1 |
| A*GUA*G** | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-cWW-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.27
Coloring options: