Motif J5_43153.3 Version J5_43153.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 1-13 | 2-3 | 5-8 | 6-7 | 9-10 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_7A0S_003 | 7A0S | 0.0792 | 2 | X | LSU rRNA | C | 541 | G | 543 | * | C | 569 | G | 570 | G | 572 | C | 573 | * | G | 586 | A | 587 | G | 588 | * | C | 1274 | A | 1275 | * | U | 2000 | G | 2001 | cWW | cWW | cWW | cWW | cWW | cWW |
| 2 | J5_7RQB_003 | 7RQB | 0.0000 | 2 | 1A | LSU rRNA | C | 531 | G | 533 | * | C | 560 | G | 561 | G | 563 | C | 564 | * | G | 577 | A | 578 | G | 579 | * | C | 1261 | A | 1262 | * | U | 2017 | G | 2018 | cWW | cWW | cWW | cWW | cWW | cWW |
| 3 | J5_5J7L_014 | 5J7L | 0.0920 | 2 | DA | LSU rRNA | C | 531 | G | 533 | * | C | 560 | G | 561 | A | 563 | C | 564 | * | G | 577 | G | 578 | G | 579 | * | C | 1261 | A | 1262 | * | U | 2017 | G | 2018 | cWW | cWW | cWW | cWW | cWW | cWW |
| 4 | J5_4WF9_003 | 4WF9 | 0.1059 | 2 | X | LSU rRNA | U | 576 | G | 578 | * | C | 603 | G | 604 | G | 606 | C | 607 | * | G | 620 | A | 621 | A | 622 | * | U | 1299 | G | 1300 | * | C | 2044 | A | 2045 | cWW | cWW | cWW | cWW | cWW | cWW |
| 5 | J5_4V9F_002 | 4V9F | 0.2501 | 2 | 0 | LSU rRNA | G | 537 | G | 539 | * | C | 617 | G | 618 | A | 620 | C | 621 | * | G | 634 | A | 635 | G | 636 | * | C | 1365 | C | 1366 | * | G | 2058 | U | 2059 | cWW | cWW | cWw | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CGUGC*GAG*CA*UG | 2 |
| CAG*CGUAC*GGG*CA*UG | 1 |
| UAG*CGUGC*GAA*UG*CA | 1 |
| GCG*CGUAC*GAG*CC*GU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GUG*A** | 3 |
| A*GUA*G** | 1 |
| C*GUA*A** | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.27
Coloring options: