1AJU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1AJU_001 | 1/A/29:36 | No text annotation | geometric HL_4V9F_003 HL_75660.9 | |
| HL_1AJU_002 | 2/A/29:36 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_1AJU_003 | 3/A/29:36 | No text annotation | geometric HL_4V9F_003 HL_75660.9 | |
| HL_1AJU_004 | 4/A/29:36 | No text annotation | geometric HL_4WF9_003 HL_75660.9 | |
| HL_1AJU_005 | 5/A/29:36 | No text annotation | ||
| HL_1AJU_006 | 6/A/29:36 | No text annotation | geometric HL_4V9F_003 HL_75660.9 | |
| HL_1AJU_007 | 7/A/29:36 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_1AJU_008 | 8/A/29:36 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_1AJU_009 | 9/A/29:36 | No text annotation | ||
| HL_1AJU_010 | 10/A/29:36 | Mini UNCG | geometric HL_4TUW_002 HL_12626.2 | |
| HL_1AJU_011 | 11/A/29:36 | Mini UNCG | geometric HL_6TQB_001 HL_12626.2 | |
| HL_1AJU_012 | 12/A/29:36 | No text annotation | ||
| HL_1AJU_013 | 13/A/29:36 | No text annotation | ||
| HL_1AJU_014 | 14/A/29:36 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_1AJU_015 | 15/A/29:36 | No text annotation | geometric HL_6CYT_001 HL_60914.1 | |
| HL_1AJU_016 | 16/A/29:36 | No text annotation | ||
| HL_1AJU_022 | 17/A/29:36 | No text annotation | ||
| HL_1AJU_018 | 18/A/29:36 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_1AJU_019 | 19/A/29:36 | No text annotation | ||
| HL_1AJU_020 | 20/A/29:36 | No text annotation | geometric HL_6CYT_001 HL_60914.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1AJU_021 | tRNA D-loop | ||
| HL_1AJU_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1AJU_001 | 1/A/22:26, 1/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_002 | 2/A/22:26, 2/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_003 | 3/A/22:26, 3/A/39:40 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_1AJU_004 | 4/A/22:26, 4/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_005 | 5/A/22:26, 5/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_006 | 6/A/22:26, 6/A/39:40 | Major groove intercalation | geometric IL_5LYS_007 IL_77710.2 | |
| IL_1AJU_007 | 7/A/22:26, 7/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_008 | 8/A/22:26, 8/A/39:40 | Major groove intercalation | geometric IL_1XOK_001 IL_77710.2 | |
| IL_1AJU_009 | 9/A/22:26, 9/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_010 | 10/A/22:26, 10/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_011 | 11/A/22:26, 11/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_012 | 12/A/22:26, 12/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_013 | 13/A/22:26, 13/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_014 | 14/A/22:26, 14/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_015 | 15/A/22:26, 15/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_016 | 16/A/22:26, 16/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_017 | 17/A/22:26, 17/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_018 | 18/A/22:26, 18/A/39:40 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1AJU_019 | 19/A/22:26, 19/A/39:40 | Major groove intercalation | geometric IL_1XOK_001 IL_77710.2 | |
| IL_1AJU_020 | 20/A/22:26, 20/A/39:40 | Multiple bulged bases | geometric IL_4LFB_005 IL_71421.4 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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