1L9A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1L9A_001 | 1/B/146:151 | GNRA variation | ||
| HL_1L9A_002 | 1/B/197:202 | GNRA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1L9A_001 | 1/B/117:120, 1/B/230:234 | No text annotation | geometric IL_1MFQ_001 IL_05553.1 | |
| IL_1L9A_009 | 1/B/120:122, 1/B/228:230 | Isolated non-canonical cWW pair | ||
| IL_1L9A_004 | 1/B/132:134, 1/B/163:165 | Isolated tHS basepair with bulges | ||
| IL_1L9A_005 | 1/B/138:141, 1/B/156:159 | Tandem non-canonical cWW pairs | ||
| IL_1L9A_006 | 1/B/181:187, 1/B/212:216 | No text annotation | ||
| IL_1L9A_008 | 1/B/190:195, 1/B/204:209 | tSH-tHW-tHS-cWW |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1L9A_002 | Tandem non-canonical cWW pairs | ||
| IL_1L9A_003 | Isolated cWH basepair | ||
| IL_1L9A_007 | Isolated cWH basepair |
Valid loops
No loops found
Problematic loops
No problematic loops
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