1N66 | Motifs

Valid loops

Loop id	Location	Annotation; motif group	Mapped info
HL_1N66_001	1/A/9:14	GNRA	geometric HL_3LQX_001 HL_34789.5
HL_1N66_002	2/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_003	3/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_004	4/A/9:14	GNRA	geometric HL_4Y1M_003 HL_34789.5
HL_1N66_005	5/A/9:14	UNCG variation	geometric HL_2CZJ_007 NA
HL_1N66_006	6/A/9:14	GNRA	geometric HL_4Y1M_002 HL_34789.5
HL_1N66_007	7/A/9:14	GNRA	geometric HL_3E5C_001 HL_34789.5
HL_1N66_008	8/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_009	9/A/9:14	GNRA	geometric HL_5TBW_017 NA
HL_1N66_010	10/A/9:14	GNRA	geometric HL_4Y1M_003 HL_34789.5
HL_1N66_011	11/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_012	12/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_013	13/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_014	14/A/9:14	GNRA	geometric HL_5TBW_017 NA
HL_1N66_015	15/A/9:14	GNRA	geometric HL_5TBW_017 NA
HL_1N66_016	16/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_017	17/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_018	18/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5
HL_1N66_019	19/A/9:14	GNRA	geometric HL_5TBW_017 NA
HL_1N66_020	20/A/9:14	GNRA	geometric HL_4QLM_001 HL_34789.5

Problematic loops

No problematic loops

Valid loops

Loop id	Location	Annotation; motif group	Mapped info
IL_1N66_001	1/A/4:7, 1/A/16:19	Tandem non-canonical cWW pairs	geometric IL_3R2D_002 IL_71194.3
IL_1N66_002	2/A/4:7, 2/A/16:19	Tandem non-canonical cWW pairs	geometric IL_5TBW_129 NA
IL_1N66_003	3/A/4:7, 3/A/16:19	Tandem non-canonical cWW pairs	geometric IL_3R2D_002 IL_71194.3
IL_1N66_005	4/A/4:7, 4/A/16:19	Tandem non-canonical cWW pairs	geometric IL_2PN3_004 IL_71194.3
IL_1N66_007	5/A/4:7, 5/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4V88_391 NA
IL_1N66_008	6/A/4:7, 6/A/16:19	Tandem non-canonical cWW pairs	geometric IL_5TBW_129 NA
IL_1N66_009	7/A/4:7, 7/A/16:19	Tandem non-canonical cWW pairs	geometric IL_5EW4_001 IL_76776.3
IL_1N66_010	8/A/4:7, 8/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4EYA_003 IL_71194.3
IL_1N66_011	9/A/4:7, 9/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4V88_391 NA
IL_1N66_013	10/A/4:7, 10/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4V88_391 NA
IL_1N66_014	11/A/4:7, 11/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4V88_391 NA
IL_1N66_015	12/A/4:7, 12/A/16:19	Tandem non-canonical cWW pairs	geometric IL_280D_001 NA
IL_1N66_016	13/A/4:7, 13/A/16:19	Tandem non-canonical cWW pairs	geometric IL_5EW4_001 IL_76776.3
IL_1N66_017	14/A/4:7, 14/A/16:19	Tandem non-canonical cWW pairs	geometric IL_3R2D_002 IL_71194.3
IL_1N66_018	15/A/4:7, 15/A/16:19	Tandem non-canonical cWW pairs	geometric IL_5TBW_129 NA
IL_1N66_019	16/A/4:7, 16/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4EYA_003 IL_71194.3
IL_1N66_020	17/A/4:7, 17/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4UYK_003 IL_71194.3
IL_1N66_021	18/A/4:7, 18/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4V88_391 NA
IL_1N66_023	19/A/4:7, 19/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4V88_391 NA
IL_1N66_024	20/A/4:7, 20/A/16:19	Tandem non-canonical cWW pairs	geometric IL_4V88_391 NA

Problematic loops

loop id	Problem	Sequence
IL_1N66_004	complementary	No text annotation
IL_1N66_006	complementary	Isolated non-canonical cWW pair
IL_1N66_012	complementary	Isolated non-canonical cWW pair
IL_1N66_022	complementary	Isolated non-canonical cWW pair

Valid loops

No loops found

Problematic loops

No problematic loops

1N66 Hairpin, Internal, and multi-helix Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops