1U6B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1U6B_001 | 1/B/23:28 | GNRA HL_37824.8 | ||
| HL_1U6B_002 | 1/B/70:75 | Pseudoknot geometry HL_65794.5 | ||
| HL_1U6B_004 | 1/B/153:158 | GNRA variation HL_37824.8 | ||
| HL_1U6B_003 | 1/B/1002:1013 | U1 small nuclear ribonucleoprotein A binding hairpin HL_33074.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1U6B_001 | 1/B/19:22, 1/B/29:31 | Isolated non-canonical cWW pair IL_57744.1 | ||
| IL_1U6B_002 | 1/B/56:60, 1/B/84:88 | Double sheared with non-canonical cWW IL_17948.2 | ||
| IL_1U6B_003 | 1/B/61:65, 1/B/80:83 | Receptor of 11-nt loop-receptor motif IL_67767.4 | ||
| IL_1U6B_004 | 1/B/96:100, 1/B/119:122 | No text annotation IL_64231.5 | ||
| IL_1U6B_005 | 1/B/100:102, 1/B/117:119 | Isolated non-canonical cWW pair IL_28037.2 | ||
| IL_1U6B_007 | 1/B/128:130, 1/B/177:178 | Minor groove platform IL_51454.3 | ||
| IL_1U6B_008 | 1/B/134:144, 1/B/166:173 | Pseudoknot IL_43467.1 | ||
| IL_1U6B_009 | 1/B/147:150, 1/B/162:163 | Major groove platform with intercalated tWH IL_14368.1 | ||
| IL_1U6B_013 | 1/B/147:151, 1/B/160:163 | Receptor of 11-nt loop-receptor motif IL_67767.4 | ||
| IL_1U6B_010 | 1/B/150:151, 1/B/160:162 | Major groove intercalation IL_07039.3 | ||
| IL_1U6B_011 | 1/B/181:184, 1/C/197:203 | Reverse kink-turn IL_09908.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1U6B_006 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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