2YDH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2YDH_001 | 1/A/23:29 | Pseudoknot geometry | homologous HL_4AOB_001 HL_30680.4 | |
| HL_2YDH_002 | 1/A/49:54 | GNRA | homologous HL_4AOB_002 HL_34789.1 | |
| HL_2YDH_003 | 1/A/73:78 | GNRA | homologous HL_4AOB_003 HL_34789.1 | |
| HL_2YDH_004 | 1/A/23:29 | Pseudoknot geometry | geometric HL_4AOB_001 HL_30680.4 | |
| HL_2YDH_005 | 1/A/49:54 | GNRA | geometric HL_5B2T_001 HL_34789.1 | |
| HL_2YDH_006 | 1/A/73:78 | GNRA | geometric HL_4RUM_002 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2YDH_001 | 1/A/13:15, 1/A/40:41 | Single bulged A | homologous IL_5FJC_001 IL_14190.1 | |
| IL_2YDH_002 | 1/A/17:21, 1/A/31:38 | Kink-turn | homologous IL_4KQY_002 IL_90775.1 | |
| IL_2YDH_003 | 1/A/44:47, 1/A/56:58 | Major groove platform with extra pair | homologous IL_5FJC_003 IL_15698.4 | |
| IL_2YDH_004 | 1/A/64:69, 1/A/82:85 | Pseudoknot | homologous IL_5FJC_004 IL_69145.4 | |
| IL_2YDH_005 | 1/A/13:15, 1/A/40:41 | Single bulged A | geometric IL_4V9F_002 IL_14190.1 | |
| IL_2YDH_006 | 1/A/17:21, 1/A/31:38 | Kink-turn | geometric IL_5G4T_002 NA | |
| IL_2YDH_007 | 1/A/44:47, 1/A/56:58 | Major groove platform with extra pair | geometric IL_4OQU_001 IL_15698.4 | |
| IL_2YDH_008 | 1/A/64:69, 1/A/82:85 | Pseudoknot | geometric IL_5FJC_004 IL_69145.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_2YDH_001 | 1/A/8:13, 1/A/41:42, 1/A/60:64, 1/A/85:86 | SAM-I riboswitch junction | homologous J4_5FJC_001 J4_40439.2 | |
| J4_2YDH_002 | 1/A/8:13, 1/A/41:42, 1/A/60:64, 1/A/85:86 | No text annotation |
Problematic loops
No problematic loops
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