3CUL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3CUL_001 | 1/C/7:12 | GNRA HL_37824.7 | ||
| HL_3CUL_002 | 1/C/29:40 | U1 small nuclear ribonucleoprotein A binding hairpin HL_33074.4 | ||
| HL_3CUL_003 | 1/C/69:77 | T-loop related HL_20167.2 | ||
| HL_3CUL_004 | 1/D/107:112 | GNRA | geometric HL_4RUM_002 HL_37824.7 | |
| HL_3CUL_005 | 1/D/129:140 | U1 small nuclear ribonucleoprotein A binding hairpin | geometric HL_3CUL_002 HL_33074.4 | |
| HL_3CUL_006 | 1/D/169:177 | T-loop related | geometric HL_3CUL_003 HL_20167.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3CUL_007 | 1/C/1:2, 1/C/17:19 | Single bulged U IL_89505.4 | ||
| IL_3CUL_001 | 1/C/22:25, 1/C/44:49 | No text annotation IL_05192.4 | ||
| IL_3CUL_008 | 1/C/57:59, 1/C/87:89 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_3CUL_004 | 1/D/101:102, 1/D/117:119 | Single bulged U | geometric IL_2R8S_004 IL_89505.4 | |
| IL_3CUL_005 | 1/D/122:125, 1/D/144:149 | No text annotation | geometric IL_3CUL_001 IL_05192.4 | |
| IL_3CUL_006 | 1/D/157:159, 1/D/187:189 | Isolated non-canonical cWW contact | geometric IL_4V88_395 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3CUL_002 | Tandem non-canonical cWW pairs | ||
| IL_3CUL_003 | Decoding loop related |
Valid loops
No loops found
Problematic loops
No problematic loops
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