3GX7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3GX7_001 | 1/A/23:29 | Pseudoknot geometry | geometric HL_4AOB_001 HL_30680.5 | |
| HL_3GX7_002 | 1/A/49:54 | GNRA | geometric HL_5F9F_003 HL_34789.4 | |
| HL_3GX7_003 | 1/A/73:78 | GNRA | geometric HL_4AOB_003 HL_34789.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3GX7_002 | 1/A/17:21, 1/A/31:38 | Kink-turn | geometric IL_5G4T_002 IL_90775.2 | |
| IL_3GX7_003 | 1/A/44:47, 1/A/56:58 | Major groove platform with extra pair | geometric IL_5FJC_003 IL_15698.5 | |
| IL_3GX7_004 | 1/A/64:69, 1/A/82:85 | Pseudoknot | geometric IL_4AOB_004 IL_69145.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3GX7_001 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3GX7_001 | 1/A/8:15, 1/A/40:42, 1/A/60:64, 1/A/85:86 | No text annotation |
Problematic loops
No problematic loops
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