3Q1Q Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3Q1Q_001 | 1/B/29:34 | No text annotation | ||
| HL_3Q1Q_002 | 1/B/77:83 | GNRA | geometric HL_4V9F_036 HL_37824.5 | |
| HL_3Q1Q_003 | 1/B/92:97 | GNRA | geometric HL_4LFB_028 HL_37824.5 | |
| HL_3Q1Q_004 | 1/B/135:140 | GNRA | geometric HL_5UZ6_001 HL_37824.5 | |
| HL_3Q1Q_005 | 1/B/165:173 | No text annotation | geometric HL_1U9S_003 HL_20167.1 | |
| HL_3Q1Q_006 | 1/B/187:192 | GNRA | geometric HL_4LFB_024 HL_37824.5 | |
| HL_3Q1Q_008 | 1/B/284:289 | GNRA | geometric HL_4LFB_028 HL_37824.5 | |
| HL_3Q1Q_010 | 1/C/37:42 | GNRA | geometric HL_4WF9_027 HL_37824.5 | |
| HL_3Q1Q_011 | 1/C/63:71 | T-loop with 2 stacked bulged bases | geometric HL_6CU1_001 HL_28252.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3Q1Q_007 | No text annotation | ||
| HL_3Q1Q_009 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3Q1Q_010 | 1/B/24:25, 1/B/38:40 | No text annotation | ||
| IL_3Q1Q_001 | 1/B/51:53, 1/B/328:329 | Major groove platform | geometric IL_5Y85_005 IL_48076.4 | |
| IL_3Q1Q_002 | 1/B/61:68, 1/B/216:217 | No text annotation | ||
| IL_3Q1Q_003 | 1/B/103:107, 1/B/209:210 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_3Q1Q_004 | 1/B/108:109, 1/B/205:208 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.2 | |
| IL_3Q1Q_005 | 1/B/126:127, 1/B/148:151 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 IL_68140.2 | |
| IL_3Q1Q_006 | 1/B/179:181, 1/B/198:201 | Decoding loop related | geometric IL_2O3X_003 IL_31737.2 | |
| IL_3Q1Q_007 | 1/B/227:233, 1/B/261:267 | No text annotation | ||
| IL_3Q1Q_008 | 1/B/236:240, 1/B/253:258 | No text annotation | ||
| IL_3Q1Q_009 | 1/C/32:35, 1/C/44:48 | Receptor of 11-nt loop-receptor motif |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3Q1Q_001 | 1/B/10:20, 1/B/44:50, 1/B/330:334 | No text annotation | ||
| J4_3Q1Q_001 | 1/B/57:58, 1/B/220:224, 1/B/270:277, 1/B/296:324 | No text annotation | ||
| J4_3Q1Q_002 | 1/B/72:73, 1/B/87:88, 1/B/101:102, 1/B/211:212 | No text annotation | ||
| J4_3Q1Q_003 | 1/B/111:125, 1/B/152:160, 1/B/178:179, 1/B/201:203 | No text annotation | ||
| J4_3Q1Q_004 | 1/C/7:10, 1/C/25:27, 1/C/53:59, 1/C/75:76 | No text annotation |
Problematic loops
No problematic loops
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