4CQN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4CQN_001 | 1/B/12:23 | tRNA D-loop | homologous HL_3ZGZ_001 HL_18470.1 | |
| HL_4CQN_009 | 1/B/31:39 | No text annotation | homologous HL_6PMO_004 NA | |
| HL_4CQN_003 | 1/B/47A:47F | No text annotation | homologous HL_3ZGZ_002 NA | |
| HL_4CQN_004 | 1/B/53:61 | T-loop with 2 stacked bulged bases | homologous HL_2BTE_004 NA | |
| HL_4CQN_005 | 1/E/12:23 | tRNA D-loop | homologous HL_3ZGZ_001 HL_18470.1 | |
| HL_4CQN_010 | 1/E/47:47 | Mini UNCG | homologous HL_5AH5_007 HL_90436.1 | |
| HL_4CQN_008 | 1/E/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4CQN_002 | tRNA D-loop | ||
| HL_4CQN_006 | No text annotation | ||
| HL_4CQN_007 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_4CQN_001 | 1/B/7:10, 1/B/25:27, 1/B/43:45, 1/B/47:49, 1/B/65:66 | No text annotation | homologous J5_3ZGZ_001 J5_21852.1 | |
| J5_4CQN_002 | 1/E/7:10, 1/E/25:27, 1/E/43:45, 1/E/47:49, 1/E/65:66 | No text annotation | homologous J5_3ZGZ_001 J5_21852.1 |
Problematic loops
No problematic loops
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