4RQE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4RQE_001 | 1/B/15:20A | tRNA D-loop | homologous HL_3RG5_005 HL_18141.3 | |
| HL_4RQE_003 | 1/B/47C:47H | GNRA | homologous HL_3RG5_007 HL_34789.5 | |
| HL_4RQE_004 | 1/B/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3W3S_004 HL_33597.4 | |
| HL_4RQE_005 | 1/D/15:20A | tRNA D-loop | homologous HL_3RG5_005 HL_18141.3 | |
| HL_4RQE_007 | 1/D/47C:47H | GNRA | homologous HL_3W3S_003 HL_34789.5 | |
| HL_4RQE_009 | 1/D/52:62 | No text annotation | geometric HL_4V9I_040 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4RQE_002 | No text annotation | ||
| HL_4RQE_006 | No text annotation | ||
| HL_4RQE_008 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4RQE_001 | 1/B/1:3, 1/B/70:72 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_01003.5 | |
| IL_4RQE_002 | 1/B/5B:7, 1/B/66:67A | Isolated non-canonical cWW pair | homologous IL_3RG5_002 IL_68118.5 | |
| IL_4RQE_003 | 1/D/5B:7, 1/D/66:67A | Isolated non-canonical cWW pair | homologous IL_3RG5_002 IL_68118.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_4RQE_003 | 1/B/7:10, 1/B/25:26, 1/B/44:46, 1/B/47L:50, 1/B/64:66 | No text annotation | homologous J5_8G9Z_001 J5_22280.1 | |
| J5_4RQE_002 | 1/D/7:11, 1/D/24:27, 1/D/43:46, 1/D/47:50, 1/D/64:66 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_4RQE_001 | No text annotation |
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