4X4P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4X4P_001 | 1/B/12:20 | T-loop with 2 bulged bases not stacked | geometric HL_5C45_001 NA | |
| HL_4X4P_005 | 1/F/12:20 | No text annotation | geometric HL_8P9A_197 HL_36455.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4X4P_002 | No text annotation | ||
| HL_4X4P_003 | No text annotation | ||
| HL_4X4P_004 | GNRA wlth extra near cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4X4P_005 | 1/B/3:4, 1/B/28:32 | Multiple bulged bases | geometric IL_7OS0_002 IL_71421.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4X4P_001 | Isolated non-canonical cWW pair | ||
| IL_4X4P_002 | Decoding loop related | ||
| IL_4X4P_003 | No text annotation | ||
| IL_4X4P_004 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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