5FJC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5FJC_001 | 1/A/23:29 | Pseudoknot geometry HL_30680.4 | ||
| HL_5FJC_002 | 1/A/49:54 | GNRA HL_34789.1 | ||
| HL_5FJC_003 | 1/A/73:78 | GNRA HL_34789.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5FJC_001 | 1/A/13:15, 1/A/40:41 | Single bulged A IL_14190.1 | ||
| IL_5FJC_002 | 1/A/17:21, 1/A/31:38 | Kink-turn IL_90775.1 | ||
| IL_5FJC_003 | 1/A/44:47, 1/A/56:58 | Major groove platform with extra pair IL_15698.4 | ||
| IL_5FJC_004 | 1/A/64:69, 1/A/82:85 | Pseudoknot IL_69145.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_5FJC_001 | 1/A/8:13, 1/A/41:42, 1/A/60:64, 1/A/85:86 | SAM-I riboswitch junction J4_40439.2 |
Problematic loops
No problematic loops
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