5JUU Summary
- Structure title
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Authors
- Release date
- 2016-10-05
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 4.0 Å
- Chains
- 5 RNA chains from Saccharomyces cerevisiae, Taura syndrome virus
- 78 other chains
- Nucleic acid compounds
- Other compounds
- 18S ribosomal RNA, 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, IRES
- uL14 (yeast L23), uS3 (yeast S3), uS14 (yeast S29), eL24 (yeast L24), eS4 (yeast S4), eS30 (yeast S30), uL23 (yeast L25), uS7 (yeast S5), eS31 (yeast S31), uL24 (yeast L26), eS6 (yeast S6), yeast eEF2, uL1 (yeast L1), eL27 (yeast L27), eS7 (yeast S7), uL2 (yeast L2), uL15 (yeast L28), eS8 (yeast S8), uL3 (yeast L3), eL29 (yeast L29), uS4 (yeast S9), uL4 (yeast L4), eL30 (yeast L30), eS10 (yeast S10), uL18 (yeast L5), eL31 (yeast L31), uS17 (yeast S11), eL6 (yeast L6), eL32 (yeast L32), eS12 (yeast S12), uL30 (yeast L7), eL33 (yeast L33), uS15 (yeast S13), eL8 (yeast L8), eL34 (yeast L34), uS11 (yeast S14), uL6 (yeast L9), uL29 (yeast L35), uS19 (yeast S15), uL16 (yeast L10), eL36 (yeast L36), uS9 (yeast S16), uL5 (yeast L11), eL37 (yeast L37), eS17 (yeast S17), uL11 (yeast L12), eL38 (yeast L38), uS13 (yeast S18), eL13 (yeast L13), eL39 (yeast L39), eS19 (yeast S19), eL14 (yeast L14), eL40 (yeast L40), uS10 (yeast S20), eL15 (yeast L15), eL41 (yeast L41), eS21 (yeast S21), uL13 (yeast L16), eL42 (yeast L42), uS8 (yeast S22), uL22 (yeast L17), eL43 (yeast L43), uS12 (yeast S23), eL18 (yeast L18), uL10 (yeast P0), eS24 (yeast S24), eL19 (yeast L19), RACK1 (yeast Asc1), eS25 (yeast S25), eL20 (yeast L20), uS2 (yeast S0), eS26 (yeast S26), eL21 (yeast L21), eS1 (yeast S1), eS27 (yeast S27), eL22 (yeast L22), uS5 (yeast S2), eS28 (yeast S28)
Pairwise Interactions
Interactions annotated by FR3D:- 1,805 base-pairs
- 5,151 base-stacking
- 228 base-phosphate
- 302 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5JUU contains:- 127 hairpin loops from 0 motif groups
- 254 internal loops from 0 motif groups
- 75 junction loops from 0 motif groups
3D Redundancy
5JUU has chains which belong to the following equivalence classes in the current representative set:- NR_all_03510.71 (1)
- NR_all_90506.81 (1)
- NR_all_18586.76 (1)
- NR_all_04576.4 (1)
- NR_4.0_03510.71 (1)
- NR_4.0_90506.81 (1)
- NR_4.0_18586.76 (1)
- NR_4.0_04576.4 (1)
- NR_20.0_03510.71 (1)
- NR_20.0_90506.81 (1)
- NR_20.0_18586.76 (1)
- NR_20.0_04576.4 (1)
Similar structures
7ZW0 8CDR 8CEH 8T2Y 8C01 8EVP 9N74 8CGN 6T4Q 7MPJ 8P9A 8CAH 8T2Z 8P9A 8EWB 6TB3 8T2X 8C00 7N8B 5TBW 9F9S 8EWC 8EVT 4V88 5TBW 8K82 7ZUX 8PNN 8P4V 4V88 7MPI 8CF5 9F9S 8BN3 7ZPQ 8CAS 8P4V 8PNN 6ZVI 8P85 7OSA 6SNT 9G33 6HHQ 6Q8Y 8EVQ 5I4L 5OBM 8ZH3 8ZHC 8P85 8K2D 5MEI 5NDW 5LYB 7RR5 5I4L 8T3D 6T7I 5MEI 5OBM 5ON6 8UTI 6LQP 5LYB 5NDW 6HHQ 5NDV 5ON6 8UT0 5NDV 8CG8 8EVS 8EVR 7OSM 7A1G 6WOO 8T3E 6T7T 6Z6K 6ZQB 8EUB 6SV4 7WTR 6TNU 5M1J 7ZUW 6FAI 7WTN 6ZQC 6S47 8C83 8T3F 6T83 8T3A 8Z70 7WTL 5NDG 7WTO 5FCJ 8T30 7ZRS 7AJU 7WTM 8T3B 7B7D 7WTP 5NDG 5FCJ 7NRC 8XU8 6SV4 6Z6J 6XIR 8Y0U 6RBD 6ZQD 7WTQ 7NRD 6SV4 6XIQ 9N7B 8ZHB 6ZQG 8ZGY 6KE6 7SUK 6GQV 6T83 6GQB 6LQS 5MC6 7AJT 5LL6 5TGM 6EML 8T3C 8ZGR 6GQ1 5TGM 5JUP 8YLR 6Y7C 6LQU 8BQX 5WLC 7D4I 8YLD 8BQD 6I7O 5JUT 6I7O 8Z71 5WYK 6ZCE 6LQQ 5JUO 6ZU9 3J6Y 3J6X 4V8Y 3J78 3J77 6LQT 5JUS 6RBE 7D5S 7D5T 9N73 6LQV 6ZQF 6ZQE 4V8Z 5TZS 5WYJ 6LQR 4V7R 4V7R 4V6I 7D63 5DAT 5DGV 5DGE 5DGF 5TGA 5DC3 5DAT 5DGV 5DGE 5TGA 5DGF 5FCI 5DC3 5FCI 8CCS 8CIV 4U4R 4U3U 4U4R 4U3U 4U3M 4U4Q 4U4U 4U52 4U3M 4U6F 4U52 4U4N 4U4U 4U4Q 4U6F 4U4Z 4U4Y 4U3N 4U55 4U4Z 4U4N 4U3N 4U50 4U51 4U4Y 4U51 4U55 4U50 4U53 4U53 4U56 4U56 4U4O 4U4O 8CDL 8CKU 8CMJStructures from NR_all_03510.71