5NGM Summary
- Structure title
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Authors
- Release date
- 2017-10-04
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
- Chains
- 3 RNA chains from Staphylococcus aureus
- 49 other chains
- Nucleic acid compounds
- Other compounds
- 23S Ribosomal RNA, 5S Ribosomal RNA, 16S ribosomal RNA
- 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31 type B, 50S ribosomal protein L32, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein S21, Ribosome hibernation promoting factor
Pairwise Interactions
Interactions annotated by FR3D:- 1,637 base-pairs
- 4,610 base-stacking
- 456 base-phosphate
- 521 base-ribose
- 222 oxygen stacking
- 206 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5NGM contains:- 112 hairpin loops from 0 motif groups
- 188 internal loops from 0 motif groups
- 60 junction loops from 0 motif groups
3D Redundancy
5NGM has chains which belong to the following equivalence classes in the current representative set:- NR_all_90633.29 (1)
- NR_all_83891.28 (1)
- NR_all_74023.19 (1)
- NR_4.0_90633.29 (1)
- NR_4.0_83891.28 (1)
- NR_4.0_74023.19 (1)
- NR_3.5_90633.29 (1)
- NR_3.5_83891.28 (1)
- NR_3.5_74023.19 (1)
- NR_3.0_90633.29 (1)
- NR_3.0_83891.28 (1)
- NR_3.0_74023.19 (1)
- NR_20.0_90633.29 (1)
- NR_20.0_83891.28 (1)
- NR_20.0_74023.19 (1)
Similar structures
9QEH 9QEG 9GHG 9T4R 7ASM 9GHH 6WQN 7TTW 6WRU 6S0Z 6WQQ 9I88 9I89 7ASP 6WRS 6DDG 7NHM 4WF9 5HL7 6DDD 7NHL 7ASO 4WFA 5T7V 4WFB 5HKV 4WCE 7TTU 6S0X 5NRG 6SJ6 5ND8 5TCU 5ND9 6S12 7ASN 5LI0 6FXC 6FXC 7P48 6S13 8P2G 8P2F 8P2H 8Y38 8Y37 6HMA 8Y36 6YEF 8Y39Structures from NR_all_90633.29