5WWR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5WWR_001 | 1/C/13:22 | tRNA D-loop | homologous HL_5WWT_001 HL_45175.1 | |
| HL_5WWR_003 | 1/C/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5WWT_002 HL_28252.8 | |
| HL_5WWR_004 | 1/D/13:22 | tRNA D-loop | homologous HL_5WWT_001 HL_45175.1 | |
| HL_5WWR_005 | 1/D/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5WWT_002 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5WWR_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5WWR_001 | 1/C/31:32, 1/C/37:39 | Single bulged A | geometric IL_5WWT_001 IL_31462.6 | |
| IL_5WWR_002 | 1/D/31:32, 1/D/37:39 | Single bulged A | homologous IL_5WWT_001 IL_31462.6 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_5WWR_001 | 1/C/7:10, 1/C/25:28, 1/C/42:49, 1/C/65:66 | tRNA junction | homologous J4_5WWT_001 J4_65285.1 | |
| J4_5WWR_003 | 1/D/7:10, 1/D/25:27, 1/D/43:49, 1/D/65:66 | tRNA junction | homologous J4_3WQY_001 J4_70449.28 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_5WWR_002 | tRNA junction |
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