5J1O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5J1O_001 | 1/B/30:34 | tRNA D-loop | geometric HL_5UD5_001 HL_89167.3 | |
| HL_5J1O_002 | 2/B/30:34 | Mini UNCG | geometric HL_5AH5_007 HL_90436.4 | |
| HL_5J1O_003 | 3/B/30:34 | Mini UNCG | geometric HL_5AH5_007 HL_90436.4 | |
| HL_5J1O_004 | 4/B/30:34 | No text annotation | geometric HL_1WZ2_007 HL_75660.9 | |
| HL_5J1O_005 | 5/B/30:34 | Mini UNCG | geometric HL_5AH5_007 HL_90436.4 | |
| HL_5J1O_006 | 6/B/30:34 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.4 | |
| HL_5J1O_007 | 7/B/30:34 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.4 | |
| HL_5J1O_008 | 8/B/30:34 | Mini UNCG | geometric HL_5AH5_007 HL_90436.4 | |
| HL_5J1O_009 | 9/B/30:34 | No text annotation | geometric HL_1WZ2_007 HL_75660.9 | |
| HL_5J1O_010 | 10/B/30:34 | Mini UNCG | geometric HL_5AH5_007 HL_90436.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5J1O_001 | 1/B/21:26, 1/B/39:41 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 NA | |
| IL_5J1O_002 | 1/B/29:30, 1/B/34:36 | Single bulged A | geometric IL_4P3U_005 IL_14190.3 | |
| IL_5J1O_003 | 2/B/21:26, 2/B/39:41 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_5J1O_004 | 2/B/29:30, 2/B/34:36 | Single bulged A | geometric IL_4P3U_008 IL_14190.3 | |
| IL_5J1O_005 | 3/B/21:26, 3/B/39:41 | Major groove platform with extra cWW | geometric IL_8C3A_405 NA | |
| IL_5J1O_006 | 3/B/29:30, 3/B/34:36 | Single bulged A | geometric IL_6D3P_004 NA | |
| IL_5J1O_007 | 4/B/21:26, 4/B/39:41 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_5J1O_008 | 4/B/29:30, 4/B/34:36 | Single bulged A | geometric IL_6D3P_004 NA | |
| IL_5J1O_009 | 5/B/21:26, 5/B/39:41 | No text annotation | ||
| IL_5J1O_010 | 5/B/29:30, 5/B/34:36 | Single bulged A | geometric IL_6D3P_004 NA | |
| IL_5J1O_011 | 6/B/21:26, 6/B/39:41 | No text annotation | ||
| IL_5J1O_012 | 6/B/29:30, 6/B/34:36 | Single bulged A | geometric IL_4P3U_008 IL_14190.3 | |
| IL_5J1O_013 | 7/B/21:26, 7/B/39:41 | Major groove platform with extra cWW | geometric IL_4V9F_028 IL_36931.3 | |
| IL_5J1O_014 | 7/B/29:30, 7/B/34:36 | Single bulged A | geometric IL_4P3U_005 IL_14190.3 | |
| IL_5J1O_015 | 8/B/21:26, 8/B/39:41 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 NA | |
| IL_5J1O_016 | 8/B/29:30, 8/B/34:36 | Single bulged A | geometric IL_6D3P_004 NA | |
| IL_5J1O_017 | 9/B/21:26, 9/B/39:41 | No text annotation | ||
| IL_5J1O_018 | 9/B/29:30, 9/B/34:36 | Single bulged A | geometric IL_4WF9_002 IL_14190.3 | |
| IL_5J1O_019 | 10/B/21:26, 10/B/39:41 | No text annotation | ||
| IL_5J1O_020 | 10/B/29:30, 10/B/34:36 | Single bulged A | geometric IL_4P3U_005 IL_14190.3 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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