6UFH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6UFH_001 | 1/A/13:20 | Anticodon loop related HL_86621.1 | ||
| HL_6UFH_002 | 1/A/45:50 | GNRA HL_34789.2 | ||
| HL_6UFH_003 | 1/A/70:77 | Pseudoknot geometry HL_46333.1 | ||
| HL_6UFH_004 | 1/A/106:111 | GNRA HL_34789.2 | ||
| HL_6UFH_005 | 1/A/145:150 | GNRA HL_34789.2 | ||
| HL_6UFH_006 | 1/B/13:23 | tRNA D-loop HL_88397.1 | ||
| HL_6UFH_007 | 1/B/32:40 | tRNA anticodon loop HL_81376.2 | ||
| HL_6UFH_008 | 1/B/54:62 | T-loop with 2 stacked bulged bases HL_33597.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6UFH_001 | 1/A/3:10, 1/A/23:27 | Kink-turn IL_71972.1 | ||
| IL_6UFH_002 | 1/A/34:41, 1/A/54:63 | 10x8 Sarcin-Ricin; G-bulge IL_22278.1 | ||
| IL_6UFH_003 | 1/A/125:133, 1/A/161:162 | No text annotation IL_45930.1 | ||
| IL_6UFH_004 | 1/A/139:141, 1/A/154:155 | Single bulged U IL_97561.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_6UFH_001 | 1/B/7:10, 1/B/26:28, 1/B/44:50, 1/B/66:67 | tRNA junction J4_95067.1 |
Problematic loops
No problematic loops
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