Motif IL_03097.1 Version IL_03097.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5AJ0 | 0.2177 | 4 | A2 | LSU rRNA | G | 1606 | G | 1608 | * | U | 1618 | C | 1622 | cWW | cWW | |
| 2 | ➜ | 3J79 | 0.1730 | 4 | A | LSU rRNA | G | 1026 | G | 1028 | * | U | 1038 | C | 1042 | cWW | cWW | |
| 3 | ➜ | 4V8P | 0.1778 | 4 | F1 | LSU rRNA | G | 932 | G | 934 | * | U | 944 | C | 948 | cWW | cWW | |
| 4 | ➜ | 4V88 | 0.1732 | 4 | A5 | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW | |
| 5 | ➜ | 4V91 | 0.1592 | 4 | 1 | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW | |
| 6 | ➜ | 4V19 | 0.1200 | 4 | A | LSU rRNA | G | 321 | G | 323 | * | C | 333 | C | 337 | cWW | cWW | |
| 7 | ➜ | 4V9F | 0.1102 | 4 | Multiple bulged bases | 0 | LSU rRNA | G | 868 | G | 870 | * | C | 880 | C | 884 | cWW | cWW |
| 8 | ➜ | 5FDU | 0.0888 | 4 | 1A | LSU rRNA | G | 822 | A | 824 | * | U | 834 | C | 838 | cWW | cWW | |
| 9 | ➜ | 5J7L | 0.0000 | 4 | Multiple bulged bases | DA | LSU rRNA | G | 775 | G | 777 | * | C | 787 | C | 791 | cWW | cWW |
| 10 | ➜ | 4IOA | 0.0822 | 4 | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW | |
| 11 | ➜ | 3J9W | 0.0940 | 4 | BA | LSU rRNA | G | 822 | G | 824 | * | C | 834 | C | 838 | cWW | cWW | |
| 12 | ➜ | 3J7Y | 0.1682 | 4 | A | LSU rRNA | G | 1985 | G | 1987 | * | C | 1997 | C | 2001 | cWW | cWW | |
| 13 | ➜ | 3J7P | 0.2480 | 4 | 5 | LSU rRNA | G | 1624 | G | 1626 | * | U | 1636 | C | 1640 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGG*UAAUC | 6 |
| GGG*CAAUC | 2 |
| GGA*UAACC | 2 |
| GAG*CUACC | 1 |
| GGG*CCAUC | 1 |
| GAG*CUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AAU | 8 |
| G*AAC | 2 |
| A*UAC | 1 |
| G*CAU | 1 |
| A*UAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.17 | Max 0.32
Coloring options: