RNA 3D Hub //

Motif IL_54307.1 Version IL_54307.1 of this group appears in releases 0.6 to 0.6

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 5 6 71-41-72-32-42-52-62-73-54-54-64-7
1➜1KOG0.44661C-loopOThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
2➜4A1C0.29380 35S RRNAC26A27*U52U53A54A55G56ncWWncSWcWWncSHncSH
3➜2ZJR0.30452 X LSU rRNAA921C924*G877C878A879C880U881tHWcWWcWWncSWntSWncSH
4➜2QBG0.25271 B23S rRNAG1331G1333*C1319C1320A1321A1322C1323tHWcWWcWWntSHcSWncSHntSW
5➜2QBG0.32512 B23S rRNAA909C912*G864C865A866C867U868tHWcWWcWWcSWncSHcSH
6➜1KOG0.37841 NThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
7➜2ZJR0.31781 X LSU rRNAC1344C1346*G1332G1333A1334A1335G1336cWWcWWncWWcSWncSH
8➜1S720.22691 0 LSU rRNAA2761G2763*C2717C2718A2719C2720U2721tHWcWWcWWntSHncSWncSH
9➜1KOG0.21041 KThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWncSH
10➜2ZJR0.18151 X LSU rRNAA2705G2707*C2659C2660G2661C2662U2663tHWcWWcWWntSHncSWcSH
11➜3U5H0.17643 525S rRNAA1046C1049*G999C1000A1002A1003U1004tHWcWWcWWcSW
12➜1FJG0.17740 A SSU rRNAG1142G1143*C1128C1129A1130G1131C1132cWWcWWncSWncSH
13➜4A1B0.17603 126S RRNAA1072C1075*G1025C1026A1028A1029U1030tHWcWWcWWcSWncSWntSW
14➜3UXR0.17841 A23S ribosomal RNAA2725G2727*C2680C2681U2682C2683U2684tHWcWWcWWntSHncSWcSH
15➜3UXR0.17721 A23S ribosomal RNAA1331C1333*G1319C1320A1321A1322U1323tHWcWWcWWcSWcSH
16➜1S720.16781 0 LSU rRNAA1437C1439*G1425C1426A1427C1428U1429tHWcWWcWWcSWcSH
17➜2QBG0.18211 B23S rRNAA2725A2727*U2680C2681A2682C2683U2684tHWcWWcWWcSWncSHcSH
18➜1FJG0.16740 A SSU rRNAA389C390*G371C372A373A374U375tHWcWWcWWcSWcSH
19➜2XZM0.00001 A18S RRNAA1130A1132*U1589C1590C1591C1592U1593ntHWcWWcWWcSWncSH
20➜3U5F0.29732 618S rRNAA1157A1160*U1617C1618C1619C1620U1621tHWcWWcWWcSWncSHcSHcSH
21➜2AW70.28980 A16S ribosomal RNAA389U390*A371C372A373A374U375ntHWcWWcWWcSWncSHncSH
22➜1KOG0.33331 IThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
23➜1KOG0.33861 LThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
24➜1KOG0.34041 MThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
25➜1KOG0.33391 JThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
26➜1KOG0.49571 PThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
27➜3UXR0.80592 A23S ribosomal RNAA909C912*G864C865A866C867U868tHWcWWcWWncSWtSWcSH

3D structures

Complete motif including flanking bases
SequenceCounts
AUG*CCACU8
AAAC*GCGAAU2
AAAC*GCACU2
AAA*UCACU1
AC*GCAAU1
ACCA*UCCCU1
GCACU*AAAC1
AU*ACAAU1
AGC*GCACU1
ACA*UCCCU1
GG*CCAGC1
GGG*CCAAC1
CA*UUAAG1
CGC*GGAAG1
ACG*CCACU1
CCUCU*AUG1
AUG*CCGCU1
GCAAU*AGC1
Non-Watson-Crick part of the motif
SequenceCounts
U*CAC8
AA*CGAA2
*CAA2
AA*CAC2
G*CAC1
A*CAC1
C*CCC1
CAC*AA1
CC*CCC1
CAA*G1
*CAG1
G*CAA1
*UAA1
G*GAA1
C*CAC1
U*CGC1
CUC*U1

Release history

Release0.6
Date2012-04-02
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_54307.1Only in the parent motif
IL_68930.1
Compare		IL_2QBG_033, IL_1S72_051, IL_2ZJR_028, IL_2QBG_050, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_2AW7_018, IL_1KOG_001, IL_2QBG_102IL_4A1C_005, IL_3U5H_042, IL_3UXR_048, IL_2ZJR_047, IL_3UXR_029, IL_3U5F_060, IL_3UXR_100, IL_1FJG_047, IL_1KOG_003, IL_4A1B_046, IL_2XZM_059IL_2XZM_022, IL_3O30_023, IL_3PYO_047, IL_3O58_079
IL_19935.1
Compare		IL_1FJG_047IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_2XZM_059, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096IL_3PYO_091
IL_76760.1
Compare		IL_1KOG_003IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2XZM_059, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096IL_3PYO_028
IL_00439.1
Compare		IL_2XZM_059IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096
IL_69835.1
Compare		IL_2ZJR_047IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2XZM_059, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096

Children motifs

Child motifCommon motif instancesOnly in IL_54307.1Only in the child motif
IL_73276.1
Compare		IL_4A1C_005, IL_3U5H_042, IL_2ZJR_047, IL_2QBG_033, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_028, IL_2QBG_050, IL_2XZM_059, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_2AW7_018, IL_1FJG_047, IL_1KOG_002, IL_4A1B_046, IL_1S72_051IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_003, IL_1KOG_001IL_3V2F_100, IL_3V2F_029, IL_3V2F_048
Annotations
  • C-loop (1)
    • Basepair signature
    07_tHW,cWW-cWW,cSW-tSW-cSH
    Heat map statistics
    Min 0.02 | Avg 0.35 | Max 0.99
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