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Motif IL_54307.1 Version IL_54307.1 of this group appears in releases 0.6 to 0.6

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 5 6 71-41-72-32-52-63-54-6
1 IL_1KOG_0071KOG0.44661C-loopOThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWcSWncSHcSH
2 IL_4A1C_0054A1C0.2938035S RRNAC26A27*U52U53A54A55G56ncWWcSWcWWncSH
3 IL_2ZJR_0282ZJR0.30452C-loop (H)X LSU rRNAA921C924*G877C878A879C880U881tHWcWWcWWcSWntSWncSH
4 IL_2QBG_0502QBG0.25271B23S rRNAG1331G1333*C1319C1320A1321A1322C1323cWWcWWncSW
5 IL_2QBG_0332QBG0.32512B23S rRNAA909C912*G864C865A866C867U868tHWcWWcWWcSWcSH
6 IL_1KOG_0061KOG0.37841NThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWcSWncSHcSH
7 IL_2ZJR_0472ZJR0.31781C-loop (H)X LSU rRNAC1344C1346*G1332G1333A1334A1335G1336cWWcWWncSW
8 IL_1S72_0911S720.22691C-loop (H)0 LSU rRNAA2761G2763*C2717C2718A2719C2720U2721tHWcWWcWWcSWcSH
9 IL_1KOG_0031KOG0.21041KThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100ntHWcWWcWWncSW
10 IL_2ZJR_0962ZJR0.18151C-loop (H)X LSU rRNAA2705G2707*C2659C2660G2661C2662U2663tHWcWWcWWcSWncSH
11 IL_3U5H_0423U5H0.17643525S rRNAA1046C1049*G999C1000A1002A1003U1004tHWcWWcWWcSW
12 IL_1FJG_0471FJG0.17740Minor groove platform (H)A SSU rRNAG1142G1143*C1128C1129A1130G1131C1132cWWcWWncSWncSH
13 IL_4A1B_0464A1B0.17603126S RRNAA1072C1075*G1025C1026A1028A1029U1030tHWcWWncWWcSW
14 IL_3UXR_1003UXR0.17841A23S ribosomal RNAA2725G2727*C2680C2681U2682C2683U2684tHWcWWcWWtSHcSWcSH
15 IL_3UXR_0483UXR0.17721A23S ribosomal RNAA1331C1333*G1319C1320A1321A1322U1323tHWcWWcWWcSWncSH
16 IL_1S72_0511S720.16781C-loop (H)0 LSU rRNAA1437C1439*G1425C1426A1427C1428U1429tHWcWWcWWcSWcSH
17 IL_2QBG_1022QBG0.18211B23S rRNAA2725A2727*U2680C2681A2682C2683U2684tHWcWWcWWcSWncSHncSH
18 IL_1FJG_0151FJG0.16740C-loop (H)A SSU rRNAA389C390*G371C372A373A374U375tHWcWWcWWcSW
19 IL_2XZM_0592XZM0.00001A18S RRNAA1130A1132*U1589C1590C1591C1592U1593tHWcWWcWWcSWncSH
20 IL_3U5F_0603U5F0.29732618S rRNAA1157A1160*U1617C1618C1619C1620U1621tHWcWWcWWcSWncSHncSH
21 IL_2AW7_0182AW70.28980A16S ribosomal RNAA389U390*A371C372A373A374U375ntHWcWWcWWcSWcSH
22 IL_1KOG_0011KOG0.33331IThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWcSWncSHcSH
23 IL_1KOG_0041KOG0.33861LThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWcSWcSH
24 IL_1KOG_0051KOG0.34041MThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWcSWncSHcSH
25 IL_1KOG_0021KOG0.33391JThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWcSWncSHncSH
26 IL_1KOG_0081KOG0.49571PThreonyl-tRNA synthetase mRNAA74G76*C96C97A98C99U100tHWcWWcWWcSWncSHcSH
27 IL_3UXR_0293UXR0.80592A23S ribosomal RNAA909C912*G864C865A866C867U868tHWcWWcWWcSWtSWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
AUG*CCACU8
AAAC*GCACU3
AAAC*GCGAAU2
CA*UUAAG1
GGG*CCAAC1
CGC*GGAAG1
ACG*CCACU1
AUG*CCGCU1
GG*CCAGC1
AUG*CCUCU1
AGC*GCAAU1
AGC*GCACU1
AAA*UCACU1
AC*GCAAU1
ACA*UCCCU1
ACCA*UCCCU1
AU*ACAAU1
Non-Watson-Crick part of the motif
SequenceCounts
U*CAC8
AA*CAC3
G*CAA2
AA*CGAA2
*CAA2
*UAA1
G*GAA1
C*CAC1
U*CGC1
*CAG1
U*CUC1
G*CAC1
A*CAC1
C*CCC1
CC*CCC1

Release history

Release0.6
Date2012-04-02
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_54307.1Only in the parent motif
IL_68930.1
Compare		IL_2QBG_033, IL_1S72_051, IL_2ZJR_028, IL_2QBG_050, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_2AW7_018, IL_1KOG_001, IL_2QBG_102IL_4A1C_005, IL_3U5H_042, IL_3UXR_048, IL_2ZJR_047, IL_3UXR_029, IL_3U5F_060, IL_3UXR_100, IL_1FJG_047, IL_1KOG_003, IL_4A1B_046, IL_2XZM_059IL_2XZM_022, IL_3O30_023, IL_3PYO_047, IL_3O58_079
IL_19935.1
Compare		IL_1FJG_047IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_2XZM_059, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096IL_3PYO_091
IL_76760.1
Compare		IL_1KOG_003IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2XZM_059, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096IL_3PYO_028
IL_00439.1
Compare		IL_2XZM_059IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096
IL_69835.1
Compare		IL_2ZJR_047IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2XZM_059, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096

Children motifs

Child motifCommon motif instancesOnly in IL_54307.1Only in the child motif
IL_73276.1
Compare		IL_4A1C_005, IL_3U5H_042, IL_2ZJR_047, IL_2QBG_033, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_028, IL_2QBG_050, IL_2XZM_059, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_2AW7_018, IL_1FJG_047, IL_1KOG_002, IL_4A1B_046, IL_1S72_051IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_003, IL_1KOG_001IL_3V2F_100, IL_3V2F_029, IL_3V2F_048
Annotations
  • (19)
  • C-loop (H) (6)
  • Minor groove platform (H) (1)
  • C-loop (1)
    • Basepair signature
    07_tHW,cWW-cWW,cSW-tSW-cSH
    Heat map statistics
    Min 0.02 | Avg 0.35 | Max 0.99
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