Description:
C-loop
Basepair signature:
07_tHW,cWW-cWW,cSW-tSW-cSH
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.02 | Avg 0.35 | Max 0.99
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2break 3 4 5 6 71-41-72-32-42-52-62-73-54-54-64-7
1192XZM0.00001A1130A1132*U1589C1590C1591C1592U1593ntHWcWWcWWcSWncSH
2203U5F0.29732A1157A1160*U1617C1618C1619C1620U1621tHWcWWcWWcSWncSHcSHcSH
3251KOG0.33391A74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
4261KOG0.49571A74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
5241KOG0.34041A74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
6221KOG0.33331A74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
761KOG0.37841A74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
8231KOG0.33861A74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
911KOG0.44661A74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
10172QBG0.18211A2725A2727*U2680C2681A2682C2683U2684tHWcWWcWWcSWncSHcSH
11143UXR0.17841A2725G2727*C2680C2681U2682C2683U2684tHWcWWcWWntSHncSWcSH
12102ZJR0.18151A2705G2707*C2659C2660G2661C2662U2663tHWcWWcWWntSHncSWcSH
13161S720.16781A1437C1439*G1425C1426A1427C1428U1429tHWcWWcWWcSWcSH
14273UXR0.80592A909C912*G864C865A866C867U868tHWcWWcWWncSWtSWcSH
1552QBG0.32512A909C912*G864C865A866C867U868tHWcWWcWWncSWtSWcSH
1632ZJR0.30452A921C924*G877C878A879C880U881tHWcWWcWWncSWntSWncSH
17153UXR0.17721A1331C1333*G1319C1320A1321A1322U1323tHWcWWcWWcSWcSH
1891KOG0.21041A74G76*C96C97A98C99U100tHWcWWcWWncSWcSHcSH
1981S720.22691A2761G2763*C2717C2718A2719C2720U2721tHWcWWcWWntSHncSWncSH
20134A1B0.17603A1072C1075*G1025C1026A1028A1029U1030tHWcWWcWWcSWncSWntSW
21212AW70.28980A389U390*A371C372A373A374U375ntHWcWWcWWcSWncSHncSH
22113U5H0.17643A1046C1049*G999C1000A1002A1003U1004tHWcWWcWWcSW
23181FJG0.16740A389C390*G371C372A373A374U375ntHWcWWcWWcSWncSH
2442QBG0.25271G1331G1333*C1319C1320A1321A1322C1323tHWcWWcWWntSHcSWcSHntSW
2572ZJR0.31781C1344C1346*G1332G1333A1334A1335G1336cWWcWWncWWcSWncSH
2624A1C0.29380C26A27*U52U53A54A55G56ncWWncSWcWWncSHncSH
27121FJG0.17740G1142G1143*C1128C1129A1130G1131C1132cWWcWWncSWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
AUG*CCACU8
AAAC*GCGAAU2
AAAC*GCACU2
AC*GCAAU1
AU*ACAAU1
GGG*CCAAC1
CGC*GGAAG1
GG*CCAGC1
CA*UUAAG1
ACCA*UCCCU1
ACG*CCACU1
AUG*CCGCU1
CCUCU*AUG1
AGC*GCACU1
GCACU*AAAC1
GCAAU*AGC1
ACA*UCCCU1
AAA*UCACU1
Non-Watson-Crick part of the motif
SequenceCounts
U*CAC8
*CAA2
AA*CGAA2
AA*CAC2
G*CAA1
CC*CCC1
G*GAA1
*UAA1
*CAG1
A*CAC1
C*CAC1
G*CAC1
U*CGC1
CAC*AA1
C*CCC1
CAA*G1
CUC*U1

Release history

Release0.6
Date2012-04-02
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_54307.1Only in the parent motif
IL_68930.1
Compare
IL_2QBG_033, IL_1S72_051, IL_2ZJR_028, IL_2QBG_050, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_2AW7_018, IL_1KOG_001, IL_2QBG_102IL_4A1C_005, IL_3U5H_042, IL_3UXR_048, IL_2ZJR_047, IL_3UXR_029, IL_3U5F_060, IL_3UXR_100, IL_1FJG_047, IL_1KOG_003, IL_4A1B_046, IL_2XZM_059IL_2XZM_022, IL_3O30_023, IL_3PYO_047, IL_3O58_079
IL_19935.1
Compare
IL_1FJG_047IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_2XZM_059, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096IL_3PYO_091
IL_76760.1
Compare
IL_1KOG_003IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2XZM_059, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096IL_3PYO_028
IL_00439.1
Compare
IL_2XZM_059IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096
IL_69835.1
Compare
IL_2ZJR_047IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2XZM_059, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096

Children motifs

Child motifCommon motif instancesOnly in IL_54307.1Only in the child motif
IL_73276.1
Compare
IL_4A1C_005, IL_3U5H_042, IL_2ZJR_047, IL_2QBG_033, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_028, IL_2QBG_050, IL_2XZM_059, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_2AW7_018, IL_1FJG_047, IL_1KOG_002, IL_4A1B_046, IL_1S72_051IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_003, IL_1KOG_001IL_3V2F_100, IL_3V2F_029, IL_3V2F_048

Coloring options:

Mutual discrepancy heat map legend: