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Motif IL_73276.8 Version IL_73276.8 of this group appears in releases 1.17 to 1.17

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 5 6 71-41-72-32-42-52-62-73-54-54-64-7
1➜1FJG0.89120 A SSU rRNAG1142G1143*C1128C1129A1130G1131C1132cWWcWWncSWncSH
2➜4A1C0.53800 35S RRNAC26A27*U52U53A54A55G56ncWWncSWcWWncSHncSH
3➜1VX20.39700 218S ribosomal RNAA508G509*C491C492A493C494U495cWWcWWncSWncSWcSHncSH
4➜4CUX0.43430 218S RRNAA460G461*C443C444A445A446U447ntHWcWWcWWcSWncSH
5➜4BPP0.40230 A18S RRNAA452G453*C435C436A437A438U439tHWcWWcWWcSWcSHcSH
6➜1FJG0.38070 A SSU rRNAA389C390*G371C372A373A374U375tHWcWWcWWcSWcSH
7➜2AW70.38210 A16S ribosomal RNAA389U390*A371C372A373A374U375ntHWcWWcWWcSWncSHncSH
8➜4A1B0.33233 126S RRNAA1072C1075*G1025C1026A1028A1029U1030tHWcWWcWWcSWncSWntSW
9➜3U5H0.30433 525S rRNAA1046C1049*G999C1000A1002A1003U1004tHWcWWcWWcSW
10➜4CUV0.30423 125S RRNAA1046C1049*G999C1000A1002A1003U1004tHWcWWcWWncWWcSWncSH
11➜1VX60.34973 A28S ribosomal RNAA1169C1172*G1121A1122A1124A1125U1126ntHWcWWcWWncWWcSWntSWncSH
12➜4IOA0.38831C-loopX LSU rRNAC1344C1346*G1332G1333A1334A1335G1336cWWcWWcSWncSH
13➜1S720.23831 0 LSU rRNAA1437C1439*G1425C1426A1427C1428U1429tHWcWWcWWcSWcSH
14➜4QCN0.28881 A23S Ribosomal RNAA1377C1379*G1365C1366A1367A1368U1369tHWcWWcWWcSWcSH
15➜2QBG0.26172 B23S rRNAA909C912*G864C865A866C867U868tHWcWWcWWcSWncSHcSH
16➜1VW30.25002 A21S ribosomal RNAA835C838*G787C788A789A790U791tHWcWWcWWcSWncSHncSHcSH
17➜1VX20.19022 218S ribosomal RNAA1214A1217*U1681C1682C1683C1684U1685tHWcWWcWWncSWcSWcSHcSH
18➜3J7A0.12992 A SSU rRNAA1258A1261*U1914C1915C1916C1917U1918tHWcWWcWWncSWcSWcSHcSH
19➜3U5F0.00002 618S rRNAA1157A1160*U1617C1618C1619C1620U1621tHWcWWcWWcSWncSHcSHcSH
20➜4BPP0.11841 A18S RRNAA1130A1132*U1589C1590C1591C1592U1593tHWcWWcWWcSWncSHcSH
21➜2QBG0.13001 B23S rRNAA2725A2727*U2680C2681A2682C2683U2684tHWcWWcWWcSWncSHcSH
22➜4JRC0.22191C-loopBDistal Stem I region of the glyQS T box leader RNAA73G75*C29C30U31C32U33tHWcWWcWWntSHncSWcSH
23➜4QCN0.19131 A23S Ribosomal RNAA2738G2740*C2692C2693U2694C2695U2696tHWcWWcWWntSHncSWcSH
24➜4IOA0.21601C-loopX LSU rRNAA2705G2707*C2659C2660G2661C2662U2663tHWcWWcWWntSHncSWcSH
25➜1VW30.27471 A21S ribosomal RNAA3061G3063*C2947C2948C2949A2950U2951tHWcWWcWWcSWcSH
26➜1S720.31391 0 LSU rRNAA2761G2763*C2717C2718A2719C2720U2721tHWcWWcWWntSHncSWncSH
27➜2QBG0.37841 B23S rRNAG1331G1333*C1319C1320A1321A1322C1323tHWcWWcWWntSHcSWncSHntSW
28➜4MGN0.35411 CglyQS T box riboswitchA73G75*C29C30U31C32U33ntHWcWWcWWntSHncSWcSH
29➜1VWW0.41651 528S ribosomal RNAG2427A2429*U2415G2416A2417A2418C2419ntHScWWcWWncSWcSW

3D structures

Complete motif including flanking bases
SequenceCounts
ACCA*UCCCU3
ACG*CCUCU2
AAAC*GCGAAU2
AAA*UCACU1
ACA*UCCCU1
AAUC*GCAAU1
AUG*CCUCU1
GGG*CCAAC1
UGAAC*GAA1
ACG*CCACU1
AAG*CCCAU1
AUG*CCGCU1
AAAC*GCACU1
AGC*GCAAU1
AG*CCAAU1
CCAAU*AG1
CCACU*AG1
CA*UUAAG1
AC*GCAAU1
AU*ACAAU1
AGC*GCACU1
CGC*GGAAG1
AAAC*GAUAAU1
GCGAAU*AAAC1
GG*CCAGC1
Non-Watson-Crick part of the motif
SequenceCounts
CC*CCC3
*CAA3
AA*CGAA2
C*CUC2
G*CAA2
U*CUC1
*UAA1
A*CAC1
U*CGC1
A*CCA1
GAA*A1
C*CAC1
C*CCC1
CAC*1
G*GAA1
AA*AUAA1
CGAA*AA1
G*CAC1
*CAG1
AU*CAA1
AA*CAC1
CAA*1

Release history

Release1.17
Date2014-09-04
StatusUpdated, 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_73276.8Only in the parent motif
IL_73276.7
Compare		IL_4A1C_005, IL_3U5H_042, IL_4CUX_024, IL_2QBG_033, IL_2QBG_102, IL_4CUV_045, IL_4IOA_049, IL_3U5F_060, IL_1S72_051, IL_1FJG_015, IL_2QBG_050, IL_1S72_091, IL_1VW3_085, IL_4IOA_097, IL_4A1B_046, IL_1VW3_027, IL_4MGN_003, IL_2AW7_018, IL_4JRC_003, IL_4BPP_057, IL_1FJG_047IL_4QCN_047, IL_1VX2_053, IL_1VWW_094, IL_4BPP_023, IL_4QCN_101, IL_3J7A_053, IL_1VX6_047, IL_1VX2_023IL_4NVV_050, IL_4NVV_031, IL_4NVV_100, IL_1KOG_002, IL_4IOA_028
IL_96920.1
Compare		IL_4BPP_023IL_4A1C_005, IL_4CUV_045, IL_1VW3_027, IL_2AW7_018, IL_1FJG_047, IL_4QCN_047, IL_4CUX_024, IL_2QBG_102, IL_3U5F_060, IL_1VX2_053, IL_4QCN_101, IL_1VW3_085, IL_1VX6_047, IL_4MGN_003, IL_4BPP_057, IL_4IOA_049, IL_3U5H_042, IL_1S72_091, IL_1FJG_015, IL_2QBG_033, IL_1VX2_023, IL_4A1B_046, IL_1VWW_094, IL_1S72_051, IL_2QBG_050, IL_4IOA_097, IL_3J7A_053, IL_4JRC_003

Children motifs

Child motifCommon motif instancesOnly in IL_73276.8Only in the child motif
IL_73276.9
Compare		IL_4A1C_005, IL_4CUV_045, IL_1VW3_027, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_4CUX_024, IL_2QBG_102, IL_3U5F_060, IL_4QCN_101, IL_1VW3_085, IL_1VX6_047, IL_4MGN_003, IL_4BPP_057, IL_4IOA_049, IL_4QCN_047, IL_1S72_091, IL_1FJG_015, IL_2QBG_033, IL_4A1B_046, IL_4JRC_003, IL_1S72_051, IL_2QBG_050, IL_4IOA_097IL_1VX2_023, IL_4BPP_023, IL_1VWW_094, IL_1VX2_053, IL_3J7A_053IL_4W23_055, IL_4W21_067, IL_4W21_093, IL_4IOA_028, IL_4QCN_029, IL_1KOG_002, IL_4W23_023
IL_77809.1
Compare		IL_4BPP_023, IL_3J7A_053IL_4A1C_005, IL_4CUV_045, IL_1VWW_094, IL_1VW3_027, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_4CUX_024, IL_2QBG_102, IL_3U5F_060, IL_1VX2_053, IL_4QCN_101, IL_1VW3_085, IL_1VX6_047, IL_4MGN_003, IL_4BPP_057, IL_4IOA_049, IL_4QCN_047, IL_1S72_091, IL_1FJG_015, IL_2QBG_033, IL_1VX2_023, IL_4A1B_046, IL_4JRC_003, IL_1S72_051, IL_2QBG_050, IL_4IOA_097
Annotations
  • C-loop (3)
    • Basepair signature
    cWW-tHW-cSW-R-cWW
    Heat map statistics
    Min 0.11 | Avg 0.40 | Max 0.98
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