Motif IL_85140.1 Version IL_85140.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J9M | 0.3637 | 0 | AA | SSU rRNA | U | 1413 | C | 1414 | G | 1415 | A | 1416 | A | 1417 | G | 1418 | * | C | 1388 | G | 1389 | A | 1390 | U | 1391 | A | 1392 | G | 1393 | cWW | cWW | ntSS | tHS | cWW | |||
| 2 | ➜ | 3J9W | 0.3010 | 0 | AA | SSU rRNA | G | 1338 | U | 1339 | G | 1340 | A | 1341 | A | 1342 | G | 1343 | * | C | 1312 | G | 1313 | G | 1314 | A | 1315 | U | 1316 | C | 1317 | cWW | cWW | ntSH | ntSS | tHS | cWW | ||
| 3 | ➜ | 4V8P | 0.2261 | 1 | F1 | LSU rRNA | G | 858 | U | 859 | G | 860 | A | 861 | A | 862 | G | 863 | * | U | 880 | G | 881 | G | 882 | A | 883 | A | 884 | C | 886 | cWW | ntSH | ntSH | tSH | tHS | tHS | cWW | |
| 4 | ➜ | 1FJG | 0.0000 | 0 | A | SSU rRNA | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | * | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | cWW | cWW | tSH | tHS | tHS | cWW | ||
| 5 | ➜ | 4V4Q | 0.1360 | 0 | CA | SSU rRNA | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | * | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | cWW | cWW | tSH | tHS | tHS | cWW | ||
| 6 | ➜ | 4BTS | 0.1957 | 0 | DA | SSU rRNA | U | 1538 | U | 1539 | G | 1540 | A | 1541 | A | 1542 | C | 1543 | * | G | 1512 | G | 1513 | G | 1514 | A | 1515 | U | 1516 | A | 1517 | cWW | cWW | tSH | tHS | tHS | cWW | ||
| 7 | ➜ | 3J7A | 0.2140 | 0 | A | SSU rRNA | U | 1863 | U | 1864 | G | 1865 | A | 1866 | A | 1867 | C | 1868 | * | G | 1837 | G | 1838 | G | 1839 | A | 1840 | U | 1841 | A | 1842 | cWW | cWW | tSH | tHS | tHS | cWW | ||
| 8 | ➜ | 4V88 | 0.2194 | 0 | A6 | SSU rRNA | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | * | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | cWW | cWW | ntSH | tHS | tHS | cWW | ||
| 9 | ➜ | 4V91 | 0.2400 | 0 | 1 | LSU rRNA | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | cWW | cWW | tSH | tHS | tHS | cWW | ||
| 10 | ➜ | 4V88 | 0.2676 | 0 | A5 | LSU rRNA | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | cWW | cWW | tSH | tHS | tHS | cWW | ||
| 11 | ➜ | 4V8P | 0.8894 | 0 | F1 | LSU rRNA | C | 516 | A | 517 | G | 518 | A | 519 | A | 520 | C | 521 | * | G | 457 | G | 458 | G | 459 | A | 460 | A | 461 | G | 462 | cWW | ncSW | ntHS | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAUG*CGGAUG | 2 |
| UUGAAC*GGGAUA | 2 |
| AUGAAG*CGGAUU | 2 |
| CAGAAC*GGGAAG | 1 |
| GUGAAG*CGGAUC | 1 |
| UUCAAC*GGGAUA | 1 |
| GUGAAG*UGGAAGC | 1 |
| UCGAAG*CGAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAA*GGAU | 5 |
| UGAU*GGAU | 2 |
| AGAA*GGAA | 1 |
| UGAA*GGAAG | 1 |
| CGAA*GAUA | 1 |
| UCAA*GGAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.12 | Avg 0.36 | Max 0.95
Coloring options: