1BYJ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1BYJ_001 | 1/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_002 | 2/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_003 | 3/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_004 | 4/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_005 | 5/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_006 | 6/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_007 | 7/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_008 | 8/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_009 | 9/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_010 | 10/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_011 | 11/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_012 | 12/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_013 | 13/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_014 | 14/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_015 | 15/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_016 | 16/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_017 | 17/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_018 | 18/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_019 | 19/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_020 | 20/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_021 | 21/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_022 | 22/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_023 | 23/A/11:16 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_1BYJ_024 | 24/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_025 | 25/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_026 | 26/A/11:16 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_1BYJ_027 | 27/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_028 | 28/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_029 | 29/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_030 | 30/A/11:16 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_1BYJ_031 | 31/A/11:16 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_03562.2 | |
| HL_1BYJ_032 | 32/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_033 | 33/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_034 | 34/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_035 | 35/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_036 | 36/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_037 | 37/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_1BYJ_038 | 38/A/11:16 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1BYJ_001 | 1/A/4:6, 1/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_002 | 1/A/6:8, 1/A/19:22 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_1BYJ_003 | 2/A/4:6, 2/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_004 | 2/A/6:8, 2/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_005 | 3/A/4:6, 3/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_006 | 3/A/6:8, 3/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_007 | 4/A/4:6, 4/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_008 | 4/A/6:8, 4/A/19:22 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1BYJ_009 | 5/A/4:6, 5/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_010 | 5/A/6:8, 5/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_011 | 6/A/4:6, 6/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_012 | 6/A/6:8, 6/A/19:22 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1BYJ_013 | 7/A/4:6, 7/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_014 | 7/A/6:8, 7/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_015 | 8/A/4:6, 8/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_016 | 8/A/6:8, 8/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_017 | 9/A/4:6, 9/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_018 | 9/A/6:8, 9/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_019 | 10/A/4:6, 10/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_020 | 10/A/6:8, 10/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_021 | 11/A/4:6, 11/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_022 | 11/A/6:8, 11/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_023 | 12/A/4:6, 12/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_024 | 12/A/6:8, 12/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_025 | 13/A/4:6, 13/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_026 | 13/A/6:8, 13/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_027 | 14/A/4:6, 14/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_028 | 14/A/6:8, 14/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_029 | 15/A/4:6, 15/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_030 | 15/A/6:8, 15/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_031 | 16/A/4:6, 16/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_032 | 16/A/6:8, 16/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_033 | 17/A/4:6, 17/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_034 | 17/A/6:8, 17/A/19:22 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1BYJ_035 | 18/A/4:6, 18/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_036 | 18/A/6:8, 18/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_037 | 19/A/4:6, 19/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_038 | 19/A/6:8, 19/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_039 | 20/A/4:6, 20/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_040 | 20/A/6:8, 20/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_041 | 21/A/4:6, 21/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_042 | 21/A/6:8, 21/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_043 | 22/A/4:6, 22/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_044 | 22/A/6:8, 22/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_045 | 23/A/4:6, 23/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_046 | 23/A/6:8, 23/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_047 | 24/A/4:6, 24/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_048 | 24/A/6:8, 24/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_049 | 25/A/4:6, 25/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_050 | 25/A/6:8, 25/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_051 | 26/A/4:6, 26/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_052 | 26/A/6:8, 26/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_053 | 27/A/4:6, 27/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_054 | 27/A/6:8, 27/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_055 | 28/A/4:6, 28/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_056 | 28/A/6:8, 28/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_057 | 29/A/4:6, 29/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_058 | 29/A/6:8, 29/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_059 | 30/A/4:6, 30/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_060 | 30/A/6:8, 30/A/19:22 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1BYJ_061 | 31/A/4:6, 31/A/22:24 | Isolated cWH basepair Not in a motif group | geometric IL_4J50_001 IL_51629.2 | |
| IL_1BYJ_062 | 31/A/6:8, 31/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_063 | 32/A/4:6, 32/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_064 | 32/A/6:8, 32/A/19:22 | Decoding loop with one bulged A Not in a motif group | geometric IL_3LOA_003 IL_10023.1 | |
| IL_1BYJ_065 | 33/A/4:6, 33/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_066 | 33/A/6:8, 33/A/19:22 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1BYJ_067 | 34/A/4:6, 34/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_068 | 34/A/6:8, 34/A/19:22 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_1BYJ_069 | 35/A/4:6, 35/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_004 IL_51629.2 | |
| IL_1BYJ_070 | 35/A/6:8, 35/A/19:22 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_1BYJ_071 | 36/A/4:6, 36/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_072 | 36/A/6:8, 36/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_073 | 37/A/4:6, 37/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_074 | 37/A/6:8, 37/A/19:22 | No text annotation Not in a motif group | ||
| IL_1BYJ_075 | 38/A/4:6, 38/A/22:24 | UU cWW Not in a motif group | geometric IL_1ZZ5_002 IL_51629.2 | |
| IL_1BYJ_076 | 38/A/6:8, 38/A/19:22 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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