Motif HL_02581.1 Version HL_02581.1 of this group appears in releases 3.89 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1WZ2_005 | 1WZ2 | 0.0000 | 4 | tRNA D-loop | D | tRNA | C | 912 | G | 913 | A | 914 | G | 915 | C | 916 | C | 917 | U | 918 | C | 922 | A | 924 | A | 925 | G | 926 | cWW | tSH | cWS | tSW |
| 2 | HL_2ZZM_001 | 2ZZM | 0.1755 | 4 | tRNA D-loop | B | RNA (84-MER) | C | 12 | A | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | C | 20|||A | A | 21 | A | 22 | G | 23 | cWW | tSH | cWS | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAGCCUGGUCAAAG | 1 |
| CAAGCCUGGCCAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGCCUGGUCAAA | 1 |
| AAGCCUGGCCAAA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (2)
- Basepair signature
- cWW-tSH-cWS-tSW-F-F-F
- Heat map statistics
- Min 0.18 | Avg 0.09 | Max 0.18
Coloring options: