Motif HL_04642.1 Version HL_04642.1 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7OSM_115 | 7OSM | 0.8428 | 3 | tRNA D-loop | ASIT | tRNA | C | 13 | A | 14 | G | 15 | U | 16 | G | 19 | A | 21 | G | 22 | ncWW | ||
| 2 | HL_6UFM_001 | 6UFM | 0.0000 | 4 | A | tRNA | C | 13 | A | 14 | G | 15 | G | 16 | U | 20 | A | 22 | G | 23 | cWW | |||
| 3 | HL_8VU0_001 | 8VU0 | 0.6174 | 4 | C | tRNA | C | 13 | A | 14 | G | 15 | G | 16 | U | 20 | A | 22 | G | 23 | cWW | cWS | ntWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCGGUAG | 1 |
| CAGGCGGUUAG | 1 |
| CAGGUGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCGGUA | 1 |
| AGGCGGUUA | 1 |
| AGGUGGUUA | 1 |
- Annotations
-
- (2)
- tRNA D-loop (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.62 | Avg 0.54 | Max 0.95
Coloring options: