Motif HL_04725.1 Version HL_04725.1 of this group appears in releases 3.88 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-4 | 2-6 | 3-8 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4M6D_010 | 4M6D | 0.0000 | 4 | H | aptamer | G | 28 | U | 30 | A | 31 | C | 32 | U | 33 | A | 35 | G | 36 | C | 39 | cWW | ncSH | cWW | cWS | cWW | cWS |
| 2 | HL_4M4O_002 | 4M4O | 0.1036 | 4 | B | RNA (59-MER) | G | 28 | U | 30 | A | 31 | C | 32 | U | 33 | A | 35 | G | 36 | C | 39 | cWW | ncSH | cWW | cWS | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUACUUAGUUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUACUUAGUU | 2 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWS-cWW-cWW-cWS
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: