Motif HL_04725.1 Version HL_04725.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-4 | 2-6 | 3-8 | 4-7 | 5-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4M4O_002 | 4M4O | 0.0000 | 4 | B | RNA (59-MER) | G | 28 | U | 30 | A | 31 | C | 32 | U | 33 | A | 35 | G | 36 | C | 39 | cWW | ncSH | cWW | cWS | cWW | cWS |
2 | HL_4M6D_010 | 4M6D | 0.1036 | 4 | H | aptamer | G | 28 | U | 30 | A | 31 | C | 32 | U | 33 | A | 35 | G | 36 | C | 39 | cWW | ncSH | cWW | cWS | cWW | cWS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUUACUUAGUUC | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUACUUAGUU | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWS-cWW-cWW-cWS
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: