Motif HL_06192.4 Version HL_06192.4 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_2B3J_001 | 2B3J | 0.3043 | 4 | E | anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42) | A | 31 | C | 32 | G | 36 | A | 38 | U | 39 | cWW | |
2 | HL_4V9F_006 | 4V9F | 0.0990 | 3 | 0 | LSU rRNA | G | 164 | A | 165 | C | 168 | U | 170 | C | 171 | cWW | tSH |
3 | HL_4WF9_006 | 4WF9 | 0.0687 | 3 | X | LSU rRNA | G | 197 | A | 198 | C | 201 | U | 203 | C | 204 | cWW | tSH |
4 | HL_5J7L_139 | 5J7L | 0.0000 | 3 | DA | LSU rRNA | G | 194 | A | 195 | C | 198 | U | 200 | C | 201 | cWW | ntSH |
5 | HL_8VTW_005 | 8VTW | 0.0664 | 3 | 1A | LSU rRNA | G | 194 | A | 195 | C | 198 | U | 200 | C | 201 | cWW | tSH |
6 | HL_7A0S_006 | 7A0S | 0.1016 | 3 | X | LSU rRNA | G | 171 | A | 172 | C | 175 | U | 177 | C | 178 | cWW | ntSH |
7 | HL_5TBW_001 | 5TBW | 0.1208 | 3 | 1 | LSU rRNA | U | 38 | A | 39 | C | 42 | U | 44 | A | 45 | cWW | ntSH |
8 | HL_8C3A_001 | 8C3A | 0.1309 | 3 | 1 | LSU rRNA | U | 37 | A | 38 | C | 41 | U | 43 | A | 44 | cWW | ntSH |
9 | HL_4V9F_062 | 4V9F | 0.3745 | 4 | 0 | LSU rRNA | A | 2506 | G | 2507 | C | 2510 | A | 2513 | U | 2514 | cWW | tSH |
10 | HL_4WF9_056 | 4WF9 | 0.4800 | 4 | X | LSU rRNA | A | 2498 | G | 2499 | C | 2502 | A | 2505 | U | 2506 | cWW | tSH |
11 | HL_7A0S_059 | 7A0S | 0.5080 | 4 | X | LSU rRNA | A | 2450 | G | 2451 | C | 2454 | A | 2457 | U | 2458 | cWW | tSH |
12 | HL_8VTW_059 | 8VTW | 0.4782 | 4 | 1A | LSU rRNA | C | 2471 | G | 2472 | C | 2475 | A | 2478 | G | 2479 | cWW | tSH |
13 | HL_5J7L_193 | 5J7L | 0.4694 | 4 | DA | LSU rRNA | A | 2471 | G | 2472 | C | 2475 | A | 2478 | U | 2479 | cWW | tSH |
14 | HL_5TBW_061 | 5TBW | 0.5033 | 4 | 1 | LSU rRNA | C | 2840 | G | 2841 | C | 2844 | A | 2847 | G | 2848 | cWW | tSH |
15 | HL_8C3A_062 | 8C3A | 0.4525 | 4 | 1 | LSU rRNA | C | 2812 | G | 2813 | C | 2816 | A | 2819 | G | 2820 | cWW | tSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAACAUC | 5 |
UAAGCAUA | 2 |
CGUUCAUAG | 2 |
ACUCGGAU | 1 |
AGCACAUAU | 1 |
AGUUCACAU | 1 |
AGUCCAUAU | 1 |
CGUCCACAG | 1 |
AGUUCAUAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAACAU | 5 |
GUUCAUA | 3 |
AAGCAU | 2 |
CU(P5P)CGGA | 1 |
GCACAUA | 1 |
GUUCACA | 1 |
GUCCAUA | 1 |
GUCCACA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (15)
- Basepair signature
- cWW-tSH-F
- Heat map statistics
- Min 0.07 | Avg 0.31 | Max 0.54
Coloring options: