Motif HL_08002.6 Version HL_08002.6 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_012 | 7A0S | 0.5336 | 1 | X | LSU rRNA | G | 338 | U | 339 | A | 341 | G | 342 | A | 343 | G | 344 | U | 345 | C | 346 | cWW | ||
| 2 | HL_4WF9_012 | 4WF9 | 0.3849 | 1 | X | LSU rRNA | G | 370 | U | 371 | A | 373 | U | 374 | A | 375 | A | 376 | U | 377 | C | 378 | cWW | ntWH | |
| 3 | HL_7RQB_012 | 7RQB | 0.4041 | 1 | 1A | LSU rRNA | G | 327 | U | 328 | A | 330 | A | 331 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 4 | HL_3F2X_002 | 3F2X | 0.2054 | 0 | X | FMN riboswitch | G | 36 | U | 37 | A | 38 | U | 39 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 5 | HL_5C45_002 | 5C45 | 0.2042 | 0 | X | FMN Riboswitch | G | 36 | U | 37 | A | 38 | U | 39 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 6 | HL_6DN2_002 | 6DN2 | 0.2235 | 0 | X | RNA RIBOSWITCH | G | 36 | U | 37 | A | 38 | U | 39 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 7 | HL_4FRN_007 | 4FRN | 0.2139 | 1 | B | Cobalamin riboswitch aptamer domain | G | 56 | U | 57 | A | 59 | U | 60 | A | 61 | C | 62 | U | 63 | C | 64 | cWW | tWH | |
| 8 | HL_4FRG_003 | 4FRG | 0.2008 | 1 | B | cobalamin riboswitch aptamer domain | G | 58 | U | 59 | A | 61 | U | 62 | A | 63 | C | 64 | U | 65 | C | 66 | cWW | tWH | |
| 9 | HL_6DN2_004 | 6DN2 | 0.0000 | 0 | Y | RNA (56-MER) | G | 88 | U | 89 | A | 90 | G | 91 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH | |
| 10 | HL_3F2X_005 | 3F2X | 0.0625 | 0 | X | FMN riboswitch | G | 88 | U | 89 | A | 90 | G | 91 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH | |
| 11 | HL_5C45_004 | 5C45 | 0.0918 | 0 | Y | FMN Riboswitch | G | 88 | U | 89 | A | 90 | G | 91 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH | |
| 12 | HL_5J7L_144 | 5J7L | 0.4930 | 1 | DA | LSU rRNA | G | 327 | U | 328 | A | 330 | C | 331 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 13 | HL_4V9F_012 | 4V9F | 0.6523 | 1 | 0 | LSU rRNA | G | 334 | U | 335 | A | 337 | C | 338 | A | 339 | A | 340 | C | 341 | C | 342 | cWW | tWH | |
| 14 | HL_5TBW_007 | 5TBW | 0.6944 | 1 | 1 | LSU rRNA | G | 216 | U | 217 | A | 219 | G | 220 | A | 221 | A | 222 | U | 223 | C | 224 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAUAGUC | 3 |
| GUAGAGUC | 3 |
| GUUAUACUC | 2 |
| GUGAGAGUC | 1 |
| GUAAUAAUC | 1 |
| GUGAAAGCC | 1 |
| GUGACAGCC | 1 |
| GUGACAACC | 1 |
| GUGAGAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUAGU | 3 |
| UAGAGU | 3 |
| UUAUACU | 2 |
| UGAGAGU | 1 |
| UAAUAAU | 1 |
| UGAAAGC | 1 |
| UGACAGC | 1 |
| UGACAAC | 1 |
| UGAGAAU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-tWH-R-R
- Heat map statistics
- Min 0.06 | Avg 0.39 | Max 0.76
Coloring options: